Browse Element(s) Details


OsAffx.15809.1.S1_at

Description tigr:9634.m03625
TID=OsAffx.15809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3809011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38056NANA6+22501206..22501825expressed protein
LOC_Os06g38062Os.45976.1.S1_x_at3/116+22503686..22507345transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38070Os.46306.1.S1_x_at3/116+22509716..22513920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38080Os.5809.1.S1_s_at2/116+22521478..22524610hypothetical protein
LOC_Os06g38080Os.54953.1.S1_at1/116+22521478..22524610hypothetical protein
LOC_Os06g38090OsAffx.15809.1.S1_at11/116+22525690..22534533hypothetical protein
LOC_Os06g38090OsAffx.29062.1.S1_at1/116+22525690..22534533hypothetical protein
LOC_Os06g38100OsAffx.15810.1.S1_at10/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38100OsAffx.23090.9.S1_x_at1/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38110OsAffx.5041.1.S1_s_at11/116+22549998..22550883expressed protein
LOC_Os06g38110OsAffx.5041.1.S1_at10/116+22549998..22550883expressed protein
LOC_Os06g38110Os.40406.1.A1_at7/116+22549998..22550883expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15809.1.S1_at--683--731Chr06:22530148..22530172 (25 bp)
ATGTTGCAGCTGTCGATGCACCTCA
LOC_Os06g38090
OsAffx.15809.1.S1_at--485--4731Chr06:22530140..22530164 (25 bp)
GCTGTCGATGCACCTCAAACCGCAG
LOC_Os06g38090
OsAffx.15809.1.S1_at--529--1711Chr06:22530112..22530136 (25 bp)
ACCAGCTACAACTTACGATCTACTC
LOC_Os06g38090
OsAffx.15809.1.S1_at--310--2411Chr06:22529692..22529712 (21 bp)
AAAAAGCGCGACCACCTTGGCACCG
LOC_Os06g38090
OsAffx.15809.1.S1_at--904--5831Chr06:22529683..22529707 (25 bp)
GACCACCTTGGCACCGTGCTGGAAG
LOC_Os06g38090
OsAffx.15809.1.S1_at--1071--2291Chr06:22526355..22526377 (23 bp)
AAAGGCATGATAGCGGCGCCAGCCA
LOC_Os06g38090
OsAffx.15809.1.S1_at--256--9171Chr06:22525951..22526308 (25 bp)
TGCCGTGGATGCTCCGTCCTTGGGA
LOC_Os06g38090
OsAffx.15809.1.S1_at--459--2711Chr06:22525902..22525926 (25 bp)
AAGCAGAAGTTCATCCGGGACGGCG
LOC_Os06g38090
OsAffx.15809.1.S1_at--556--7391Chr06:22525875..22525899 (25 bp)
GTGATCTCCGTGATTTTCACCGGCG
LOC_Os06g38090
OsAffx.15809.1.S1_at--293--1791Chr06:22525771..22525795 (25 bp)
ACCGTCGTTATGCACCGGCGAAGAA
LOC_Os06g38090
OsAffx.15809.1.S1_at--766--651Chr06:22525762..22525786 (25 bp)
ATGCACCGGCGAAGAAGAGCTGCTC
LOC_Os06g38090
Target Sequence 
ATGTTGCAGCTGTCGATGCACCTCAAACCGCAGCCCACCAGCTACAACTTACGATCTACTCGGCCAGGGAAAAAAAGCGC
GACCACCTTGGCACCGTGCTGGAAGGGGCGACGCCAGCCAGAAGGGGAGGCAGAAGGACTAGGTGGTCGGGGAGAGGAGG
GGGGCGCCAGCCACCCTGATTTCGGCCGTTTCGTCGATCCGCGGTCCCTCGAAGACGTTGCTGAGGTCTCATCAGTGCGA
GAGAAAGGCATGATAGCGGCGCCAGCCAGTAGCCCGAGGCAGAAGGTCCTGGGGGGCTGCGCCAGCCACCCTGGTGCCGT
GGATGCTCCGTCCTTGGGATGCTTAATCTCGCCGTCGCAGCTGAAGCAGAAGTTCATCCGGGACGGCGAGGTGATCTCCG
TGATTTTCACCGGCGGGTCGGCCGGCGGCGGCGAGGCCGCCAACTCGGTCGGCCTCGTCGTCCAGGACCGGAGGCACGTC
GATATCCAACCTTCACCGTCGTTATGCACCGGCGAAGAAGAGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis