Browse Element(s) Details


OsAffx.5041.1.S1_s_at

Description tigr:9634.m03627
TID=OsAffx.5041.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3811011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38090OsAffx.15809.1.S1_at11/116+22525690..22534533hypothetical protein
LOC_Os06g38090OsAffx.29062.1.S1_at1/116+22525690..22534533hypothetical protein
LOC_Os06g38100OsAffx.15810.1.S1_at10/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38100OsAffx.23090.9.S1_x_at1/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38110OsAffx.5041.1.S1_s_at11/116+22549998..22550883expressed protein
LOC_Os06g38110OsAffx.5041.1.S1_at10/116+22549998..22550883expressed protein
LOC_Os06g38110Os.40406.1.A1_at7/116+22549998..22550883expressed protein
LOC_Os06g38120OsAffx.15812.1.S1_at11/116+22565778..22570505expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5041.1.S1_s_at--49--5891Chr06:22550557..22550581 (25 bp)
GAGCGCGGCATCCTGGTGACCATCT
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--552--551Chr06:22550566..22550590 (25 bp)
ATCCTGGTGACCATCTTCAGCTCCG
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--1072--9651Chr06:22550582..22550606 (25 bp)
TCAGCTCCGCCGTTCTAATGGACTA
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--590--9751Chr06:22550597..22550621 (25 bp)
TAATGGACTACTTCGTCGACGGGCC
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--872--9351Chr06:22550612..22550636 (25 bp)
TCGACGGGCCTCCATGGACGGAAGG
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--761--4031Chr06:22550678..22550702 (25 bp)
CGTTCGCGACCTTCATCTGCGGCAG
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--697--9231Chr06:22550767..22550791 (25 bp)
TCCATGTGCCTCGTCGTAGCTCTAT
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--78--9411Chr06:22550780..22550804 (25 bp)
TCGTAGCTCTATCCGCGCAAACCTT
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--512--2371Chr06:22550798..22550822 (25 bp)
AAACCTTGCTTGGTCTGCTCATCAG
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--462--9071Chr06:22550804..22550828 (25 bp)
TGCTTGGTCTGCTCATCAGCGCGTT
LOC_Os06g38110
OsAffx.5041.1.S1_s_at--330--1651Chr06:22550821..22550845 (25 bp)
AGCGCGTTCCCGTACGTGCAAGACC
LOC_Os06g38110
Target Sequence 
GAGCGCGGCATCCTGGTGACCATCTTCAGCTCCGCCGTTCTAATGGACTACTTCGTCGACGGGCCTCCATGGACGGAAGG
GTCCAACGGCGGCCTGGTCTTCACCGCCACGCTGCTGCTCGCGTTCGCGACCTTCATCTGCGGCAGCGCCCTCATGCTGG
TCGGCCTCGCCGGGCGCCTCTTCTCCGGCGGCCGCCGCGTCGCCGTCGTCTCCATGTGCCTCGTCGTAGCTCTATCCGCG
CAAACCTTGCTTGGTCTGCTCATCAGCGCGTTCCCGTACGTGCAAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5041.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis