Browse Element(s) Details


OsAffx.15815.1.S1_at

Description tigr:9634.m03635
TID=OsAffx.15815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3816011/11Legume lectins beta domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38130NANA6+22575955..22577194His Kinase A domain containing protein
LOC_Os06g38140OsAffx.31070.2.S1_x_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.2.S1_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31069.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38150OsAffx.15814.1.S1_at11/116+22593566..22593928hypothetical protein
LOC_Os06g38160OsAffx.15815.1.S1_at11/116+22597674..22600260Legume lectins beta domain containing protein
LOC_Os06g38170Os.7582.1.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170Os.31929.5.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180NANA6+22604602..22605860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190OsAffx.15816.1.S1_at10/116+22610892..22612283hypothetical protein
LOC_Os06g38200Os.52817.1.S1_at11/116+22613002..22615284expressed protein
LOC_Os06g38210Os.12027.1.S1_a_at6/116+22615947..22616270expressed protein
LOC_Os06g38220Os.43124.1.S1_at1/116+22618319..22620632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38230OsAffx.27985.1.S1_at11/116+22622060..22624605hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15815.1.S1_at--1118--3791Chr06:22599500..22599524 (25 bp)
CTCCACTTGGCATCTATTGGGCCAA
LOC_Os06g38160
OsAffx.15815.1.S1_at--202--31Chr06:22599515..22599539 (25 bp)
ATTGGGCCAAAGCTAGCGTCGTTGT
LOC_Os06g38160
OsAffx.15815.1.S1_at--1086--10511Chr06:22599584..22599608 (25 bp)
TTCATCGTGGTCACAACCGGCTTTA
LOC_Os06g38160
OsAffx.15815.1.S1_at--1038--10311Chr06:22599606..22599630 (25 bp)
TTATCGGGTTATCAACCGCACCGTA
LOC_Os06g38160
OsAffx.15815.1.S1_at--267--1791Chr06:22599625..22599649 (25 bp)
ACCGTACTCATTCTCATTGCAGTAG
LOC_Os06g38160
OsAffx.15815.1.S1_at--784--51Chr06:22599640..22599664 (25 bp)
ATTGCAGTAGGATTCGACGATCGCT
LOC_Os06g38160
OsAffx.15815.1.S1_at--1016--1871Chr06:22599656..22599680 (25 bp)
ACGATCGCTGCATCCTTCAAGGGCA
LOC_Os06g38160
OsAffx.15815.1.S1_at--939--1471Chr06:22599690..22599885 (25 bp)
AGAATTTCGCAAGGGCGCATGCCAG
LOC_Os06g38160
OsAffx.15815.1.S1_at--289--8672Chr06:22599897..22599921 (25 bp)
TGTGGAGCCCTCTTGTCAGACTCTT
LOC_Os06g38160
OsAffx.15815.1.S1_at--996--4691Chr06:22599964..22599988 (25 bp)
GCGGCGACGGGCTTCTGGTATTCCA
LOC_Os06g38160
OsAffx.15815.1.S1_at--746--7291Chr06:22600180..22600204 (25 bp)
GTGCAGTTCGGGAATGCCAATGGAA
LOC_Os06g38160
Target Sequence 
CTCCACTTGGCATCTATTGGGCCAAAGCTAGCGTCGTTGTCGAGGAAGAACTAAAGTGGAGGTGGAGATGGAGATGGTGG
CATCTTCATCGTGGTCACAACCGGCTTTATCGGGTTATCAACCGCACCGTACTCATTCTCATTGCAGTAGGATTCGACGA
TCGCTGCATCCTTCAAGGGCAGCTACGAGCAGAATTTCGCAAGGGCGCATGCCAGCGTGACGCCCCTGTGGAGCCCTCTT
GTCAGACTCTTCTTCCTCCTCCGGCTGAGCTCGAGCTGCACCACGGACCCGCGGCGGCGACGGGCTTCTGGTATTCCAAC
TCCGGTGCCGACCGCGCGCTCTACGCCACCCCCATCACGCTCCTCGACGGCTTCTCCACCCAGTTCACCTTCACCGTTAC
CACGCTCAACACCGACTCCATCGGCGGGGGGCTCGCCTTCGTCCTTGCCTCCGTACATCGGGTCTCCGCCACCTCCGATG
TCGCCGTCGAGTTTGACACCCTTATGGATGTGCAGTTCGGGAATGCCAATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis