Browse Element(s) Details


Os.55968.1.S1_at

Description gb:AK109065.1
DB_XREF= gi:32994274
TID=Os.55968.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F09, full insert sequence.
FL= gb:AK109065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed
LOC_Os08g42620Os.53626.1.S1_at11/118+26805990..26809280DHHC zinc finger domain containing protein, expressed
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein
LOC_Os08g42640Os.7498.1.S1_at11/118+26815747..26820669Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55968.1.S1_at--721--5891Chr08:26813323..26813347 (25 bp)
GAGCTGGCCACCTTGTTCCAAGAAG
LOC_Os08g42630
Os.55968.1.S1_at--719--5731Chr08:26813380..26813404 (25 bp)
GACTGGACACACTCGATGTTCGACG
LOC_Os08g42630
Os.55968.1.S1_at--206--5671Chr08:26813524..26813548 (25 bp)
GACATGTTCATACGGCGAGTCCGCC
LOC_Os08g42630
Os.55968.1.S1_at--656--4411Chr08:26813573..26813597 (25 bp)
GCTTTTAGTTAACCCGTCGGTGATG
LOC_Os08g42630
Os.55968.1.S1_at--955--4191Chr08:26813585..26813609 (25 bp)
CCCGTCGGTGATGGTGGATTAGTCC
LOC_Os08g42630
Os.55968.1.S1_at--1161--9951Chr08:26813623..26813647 (25 bp)
TACCCTGAAGATTTATCATGTCTGG
LOC_Os08g42630
Os.55968.1.S1_at--664--7171Chr08:26813642..26813666 (25 bp)
GTCTGGAATTAATTTCAGCGTGTGA
LOC_Os08g42630
Os.55968.1.S1_at--299--3171Chr08:26813726..26813750 (25 bp)
AATTGATCAGTGGTGGGTCATCTAC
LOC_Os08g42630
Os.55968.1.S1_at--818--8631Chr08:26813739..26813763 (25 bp)
TGGGTCATCTACCACTGGCTCTAAT
LOC_Os08g42630
Os.55968.1.S1_at--429--4771Chr08:26813756..26813780 (25 bp)
GCTCTAATCCCTGTTCTGATCTTTT
LOC_Os08g42630
Os.55968.1.S1_at--38--8811Chr08:26813767..26813791 (25 bp)
TGTTCTGATCTTTTGTTCTTACAAG
LOC_Os08g42630
Target Sequence 
GAGCTGGCCACCTTGTTCCAAGAAGTCGACGACGACGACGACGGCGCGCGCTACCCCGACTGGACACACTCGATGTTCGA
CGACGACGACGACGGCGAGGGCGGCGGCGAGGAGGCCGTGTCGGTGATGGAGGTGATCAGGAGGCGGCGGGAGGGGGACG
GGGAGGAGTTCGACATGGAGGAGGAGATCGACCACGCCGCCGACATGTTCATACGGCGAGTCCGCCACCGCATGGCCGCC
AACCGCCGGAGCTTTTAGTTAACCCGTCGGTGATGGTGGATTAGTCCATTAATTATTAATTACCCTGAAGATTTATCATG
TCTGGAATTAATTTCAGCGTGTGATATTTTAGCTTTGATTTGTTTTTTTTTTGCTTCAGATTGAATTAATTTGGCTGAGG
CAAATTGATCAGTGGTGGGTCATCTACCACTGGCTCTAATCCCTGTTCTGATCTTTTGTTCTTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis