Browse Element(s) Details


Os.56016.1.S1_at

Description gb:AK109128.1
DB_XREF= gi:32994337
TID=Os.56016.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D07, full insert sequence.
FL= gb:AK109128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6362011/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed
LOC_Os03g63630NANA3+35867160..35873312transposon protein, putative, unclassified
LOC_Os03g63640NANA3+35873946..35877182transposon protein, putative, unclassified
LOC_Os03g63644NANA3+35887196..35887490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56016.1.S1_at--4--4891Chr03:35862070..35862094 (25 bp)
GCTTCATCATCTTCGGTTACGTGGC
LOC_Os03g63620
Os.56016.1.S1_at--231--6771Chr03:35862085..35862109 (25 bp)
GTTACGTGGCCATCGGACCAGGCAT
LOC_Os03g63620
Os.56016.1.S1_at--529--9371Chr03:35862109..35862133 (25 bp)
TCGACCTCAGCGATGTGAAGGCACG
LOC_Os03g63620
Os.56016.1.S1_at--375--3051Chr03:35862141..35862165 (25 bp)
AATCTGGACGACTACAAGAGCGGGT
LOC_Os03g63620
Os.56016.1.S1_at--1161--8431Chr03:35862248..35862272 (25 bp)
GGCCATGACGAAACTGGTCCGTGAC
LOC_Os03g63620
Os.56016.1.S1_at--1161--5651Chr03:35862318..35862453 (25 bp)
GACATGTCACCTATCCAGTCTGGAT
LOC_Os03g63620
Os.56016.1.S1_at--896--7471Chr03:35862473..35862497 (25 bp)
GTGTGGATTCACATATGTCAACGGG
LOC_Os03g63620
Os.56016.1.S1_at--939--3251Chr03:35862557..35862581 (25 bp)
CAACGACCAACAAAAGCTCTGCTTC
LOC_Os03g63620
Os.56016.1.S1_at--56--131Chr03:35862589..35862613 (25 bp)
ATTCATGCAAGGCAGGCTTCCTCGA
LOC_Os03g63620
Os.56016.1.S1_at--221--3591Chr03:35862653..35862677 (25 bp)
CATTTTCTGCTTGATCGCGGCCATT
LOC_Os03g63620
Os.56016.1.S1_at--797--531Chr03:35862666..35862690 (25 bp)
ATCGCGGCCATTCTTTCATGCTGTT
LOC_Os03g63620
Target Sequence 
GCTTCATCATCTTCGGTTACGTGGCCATCGGACCAGGCATCGACCTCAGCGATGTGAAGGCACGCGAGTACAATCTGGAC
GACTACAAGAGCGGGTGGCTCAGGGCTCGTGTGGACGACGCCGCGTACTGGGCAACAACCAGCGCCTGCCTCCGCGGCGA
CAGGGGCGCCGGGTGCAAGGCCATGACGAAACTGGTCCGTGACCCACACTCCGGCTTGTTCGTCCCCGACGGCGGCCGCC
GGCACGTCGACATGTCACCTATCCAGTCTGGATGCTGCAAGCCACCATCATCGTGTGGATTCACATATGTCAACGGGACG
ACGTGGACACCAACACCAGCAGCAGCAACAAACAACGTCGACTGCAGCAGGTGGAGCAACGACCAACAAAAGCTCTGCTT
CCAGTGCGATTCATGCAAGGCAGGCTTCCTCGACCACACCAGGAAGGCCTGGAGCTCGGCTGCCTTCTTTCCCATTTTCT
GCTTGATCGCGGCCATTCTTTCATGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis