Browse Element(s) Details


Os.9048.1.S1_at

Description gb:AK100660.1
DB_XREF= gi:32985869
TID=Os.9048.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111N01, full insert sequence.
FL= gb:AK100660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6359011/11Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed
LOC_Os03g63630NANA3+35867160..35873312transposon protein, putative, unclassified
LOC_Os03g63640NANA3+35873946..35877182transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006378biological_processmRNA polyadenylylation
GO:0006379biological_processmRNA cleavage
GO:0008152biological_processmetabolism
GO:0005847cellular_componentmRNA cleavage and polyadenylation specificity factor complex
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9048.1.S1_at--469--7551Chr03:35848103..35848127 (25 bp)
GTGGCCCAGAAGGTAGTTTATGCTC
LOC_Os03g63590
Os.9048.1.S1_at--82--6831Chr03:35848088..35848112 (25 bp)
GTTTATGCTCTTATGGTGTCACTTT
LOC_Os03g63590
Os.9048.1.S1_at--435--9871Chr03:35847922..35847946 (25 bp)
TACAGGGTGCTGTGAGACCAATCCC
LOC_Os03g63590
Os.9048.1.S1_at--317--1911Chr03:35847855..35847879 (25 bp)
ACGTGTCCAATGTTTCCTAGATGAA
LOC_Os03g63590
Os.9048.1.S1_at--39--151Chr03:35847821..35847845 (25 bp)
ATTACCTGTCTGCACATGATGAGCA
LOC_Os03g63590
Os.9048.1.S1_at--5--571Chr03:35847787..35847811 (25 bp)
ATCCTGCTTCAAATGCCTGTCTAAT
LOC_Os03g63590
Os.9048.1.S1_at--261--6271Chr03:35847755..35847779 (25 bp)
GATGTGTTGTAGATCACTGCTCTGG
LOC_Os03g63590
Os.9048.1.S1_at--976--3891Chr03:35847734..35847758 (25 bp)
CTGGGCCATCTTAGTGCCGTTGAAA
LOC_Os03g63590
Os.9048.1.S1_at--264--3171Chr03:35847647..35847671 (25 bp)
AATTGTTCTTAGCTTCTCTGTTCTT
LOC_Os03g63590
Os.9048.1.S1_at--831--8771Chr03:35847610..35847634 (25 bp)
TGTTTGCCTGCTATTCATTTGTCCA
LOC_Os03g63590
Os.9048.1.S1_at--626--7271Chr03:35847590..35847614 (25 bp)
GTCCAGTTGGTGATGTACTATGCAA
LOC_Os03g63590
Target Sequence 
GTGGCCCAGAAGGTAGTTTATGCTCTTATGGTGTCACTTTTTGGTGATGTCAAAGTTGCAGAGGAAGGGAAACTTGTTAT
ATCTGTGGATGGACAAGTAGCACACTTGGATGGGAGGAGTGGTGNTGTTGAATGTGAAAATGCTACACTGAGAGAAAGGA
TCAAGACTGCATTCCGTCGTATACAGGGTGCTGTGAGACCAATCCCGCTTATATCTTCTTGAGCTGAAGGNGTTAAAGTT
ACGCTTAAACGTGTCCAATGTTTCCTAGATGAACTTAGTAGCATTACCTGTCTGCACATGATGAGCAGGCATTTTCATCC
TGCTTCAAATGCCTGTCTAATACAGCATGATGTGTTGTAGATCACTGCTCTGGGCCATCTTAGTGCCGTTGAAATAAACT
CCAGCTGTAACATTTTGATTTTGTAGCCATTTCTAACTGTTACTCATTTCCTGTGAAATTGTTCTTAGCTTCTCTGTTCT
TTTCCAGATATTCTGTTTGCCTGCTATTCATTTGTCCAGTTGGTGATGTACTATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis