Browse Element(s) Details


Os.35309.1.A1_at

Description gb:AK068059.1
DB_XREF= gi:32978077
TID=Os.35309.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132M16, full insert sequence.
FL= gb:AK068059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6352011/11Der1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35309.1.A1_at--967--8171Chr03:35823042..35823066 (25 bp)
GGAAGATGTATACCCGCGGATGACT
LOC_Os03g63520
Os.35309.1.A1_at--124--5371Chr03:35823003..35823027 (25 bp)
GAAGACTCCTTCGTTCATCAAGGCG
LOC_Os03g63520
Os.35309.1.A1_at--52--3211Chr03:35822985..35823009 (25 bp)
CAAGGCGCTATTTGCTGATGACAAT
LOC_Os03g63520
Os.35309.1.A1_at--494--5611Chr03:35822966..35822990 (25 bp)
GACAATGTTGTTGTGGCAAGGCCAC
LOC_Os03g63520
Os.35309.1.A1_at--290--6871Chr03:35822913..35822937 (25 bp)
GTTTGGTGCTATGGGTGCAGACCCC
LOC_Os03g63520
Os.35309.1.A1_at--878--8391Chr03:35822886..35822910 (25 bp)
GGCCCAATGATCAATTGCCATTCGA
LOC_Os03g63520
Os.35309.1.A1_at--939--2211Chr03:35822801..35822825 (25 bp)
ACAAGCAATGTTCCCGTGTATTTAT
LOC_Os03g63520
Os.35309.1.A1_at--852--9931Chr03:35822675..35822699 (25 bp)
TACGAGTTTCAACCGGCTGGACAAT
LOC_Os03g63520
Os.35309.1.A1_at--384--3031Chr03:35822653..35822677 (25 bp)
AATGCCGCCATCCTTGGTTGCAGAA
LOC_Os03g63520
Os.35309.1.A1_at--184--5551Chr03:35822631..35822655 (25 bp)
GAAACTGATCCTTTTTGCGACGATT
LOC_Os03g63520
Os.35309.1.A1_at--524--6591Chr03:35822610..35822634 (25 bp)
GATTGACATCTGACCGGGATACTTT
LOC_Os03g63520
Target Sequence 
GGAAGATGTATACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACA
ATGTTGTTGTGGCAAGGCCACCCAATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCC
CAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTCNNTTTTTTTTTTTTCATCTGTTCAAATTGCGAAAT
TGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATC
TGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCC
ATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35309.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis