Browse Element(s) Details


Os.21096.1.S1_at

Description gb:AK059105.1
DB_XREF= gi:32969123
TID=Os.21096.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D06, full insert sequence.
FL= gb:AK059105.1 gb:AK102145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6350010/11AFG1-like ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21096.1.S1_at--1134--371Chr03:35809169..35809193 (25 bp)
ATCACTGCCGTCTTGTATGTCTAGC
LOC_Os03g63500
Os.21096.1.S1_at--413--5311Chr03:35809107..35809131 (25 bp)
GAAGGACCTCTTTTTGACTTGGAGA
LOC_Os03g63500
Os.21096.1.S1_at--986--6271NONE
GATGTTTGCATTCCGTAGGGCGATA
NONE
Os.21096.1.S1_at--676--7571Chr03:35807944..35807964 (21 bp)
GGGCGATATCCCGTCTCATAGAAAT
LOC_Os03g63500
Os.21096.1.S1_at--233--1391Chr03:35807917..35807941 (25 bp)
AGACCTCACTGTATCTGGAGCGCGT
LOC_Os03g63500
Os.21096.1.S1_at--1160--2771Chr03:35807846..35807870 (25 bp)
AAGAGCAGCACTGTTTCGCAGTCTG
LOC_Os03g63500
Os.21096.1.S1_at--1142--5751Chr03:35807805..35807829 (25 bp)
GACGAGACCCTTATAGTACCATTAT
LOC_Os03g63500
Os.21096.1.S1_at--460--1251Chr03:35807739..35807763 (25 bp)
AGATTGGAGAACCTACTTGCCGTCT
LOC_Os03g63500
Os.21096.1.S1_at--20--2071Chr03:35807725..35807749 (25 bp)
ACTTGCCGTCTGTACAATGCACTGA
LOC_Os03g63500
Os.21096.1.S1_at--22--3171Chr03:35807673..35807697 (25 bp)
AATTGCGTCGCACATATTCTTATGA
LOC_Os03g63500
Os.21096.1.S1_at--490--9551Chr03:35807656..35807680 (25 bp)
TCTTATGACTTCCTAATTCCTATCC
LOC_Os03g63500
Target Sequence 
ATCACTGCCGTCTTGTATGTCTAGCTGCCTCATCCATTGATGATCTTTTTCAAGGAACTGATGAAGGACCTCTTTTTGAC
TTGGAGAGTTTTCAGTTCGAAGGTGAAGCTGAAGGGGCAAAGCTTAGGAGGGATGTTTTAGCAGAAGGTAATGTTGGTGC
AGCGCCTTCTCCTACAGGCCTAGTGGCAATTTTGTCTGGCCAAGAAGAGATGTTTGCATTCCGTAGGGCGATATCCCGTC
TCATAGAAATGCAGACCTCACTGTATCTGGAGCGCGTCGAGCGTGTGCACTCATCCCTCCAACAGCAGAGTTCGGTTCTT
ACAAAGAGCAGCACTGTTTCGCAGTCTGCTCCGTCCGTTTGACAGACGAGACCCTTATAGTACCATTATTTCATTTCTTA
TCGTGGAAAAAATTGTCGAAAGCACTAATAAGATTGGAGAACCTACTTGCCGTCTGTACAATGCACTGAACCGTACAAAA
CATAAGTGATTCGAGCAATTGCGTCGCACATATTCTTATGACTTCCTAATTCCTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis