Browse Element(s) Details


Os.18419.1.S1_at

Description gb:AK070236.1
DB_XREF= gi:32980260
TID=Os.18419.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043F20, full insert sequence.
FL= gb:AK071441.1 gb:AK070236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6345011/11SnRK1-interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18419.1.S1_at--410--3211Chr03:35792775..35792799 (25 bp)
CAAGGCCTGCGCAAGGTTTGGCTTT
LOC_Os03g63450
Os.18419.1.S1_at--263--6871Chr03:35792790..35792814 (25 bp)
GTTTGGCTTTGGTCTGTATCTTTAC
LOC_Os03g63450
Os.18419.1.S1_at--979--1991Chr03:35792827..35792851 (25 bp)
ACTCCGTAGGGAAGTGGCGCAGCAT
LOC_Os03g63450
Os.18419.1.S1_at--579--3651Chr03:35792855..35792879 (25 bp)
CTTCATAAGTTCTGCGTTGGTTCTC
LOC_Os03g63450
Os.18419.1.S1_at--349--7891Chr03:35792873..35792897 (25 bp)
GGTTCTCGCCTGATTTGGTTCAAAA
LOC_Os03g63450
Os.18419.1.S1_at--595--7511Chr03:35792902..35792926 (25 bp)
GTGGTTGATCCATCTCTCTGTTTAT
LOC_Os03g63450
Os.18419.1.S1_at--657--8212Chr03:35792971..35792995 (25 bp)
GGAATTCTCTTTATCTTCTGAACCT
LOC_Os03g63450
Os.18419.1.S1_at--1071--5411Chr03:35792990..35793014 (25 bp)
GAACCTCTTTTCTTGTAGATACGAG
LOC_Os03g63450
Os.18419.1.S1_at--229--6451Chr03:35793007..35793031 (25 bp)
GATACGAGTCAATGAGGCCCCGTCT
LOC_Os03g63450
Os.18419.1.S1_at--784--9551Chr03:35793038..35793062 (25 bp)
TCTTTCCTTTTTGGCACTGTTATAA
LOC_Os03g63450
Os.18419.1.S1_at--771--9891Chr03:35793079..35793103 (25 bp)
TACTCCTACGGTTCTGGTTCCATAA
LOC_Os03g63450
Target Sequence 
CAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCNACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCC
ACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTT
TTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGA
GTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCT
GGTTCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis