Browse Element(s) Details


Os.50912.1.S1_at

Description gb:AK059425.1
DB_XREF= gi:32969443
TID=Os.50912.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E07, full insert sequence.
FL= gb:AK059425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6342011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006812biological_processcation transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50912.1.S1_at--383--8611Chr03:35769659..35769683 (25 bp)
TGGTGCAGATACTCCGGTCGCTGGA
LOC_Os03g63420
Os.50912.1.S1_at--1148--1211Chr03:35769788..35769812 (25 bp)
AGTTCTTCGGAGGATGCGACATCAC
LOC_Os03g63420
Os.50912.1.S1_at--981--8591Chr03:35771187..35771211 (25 bp)
TGGTCCTTTACGATGTACTCTTCAG
LOC_Os03g63420
Os.50912.1.S1_at--675--6271Chr03:35771198..35771222 (25 bp)
GATGTACTCTTCAGCCATGACAAAG
LOC_Os03g63420
Os.50912.1.S1_at--370--7391Chr03:35771266..35771290 (25 bp)
GTGAGGTCCAACTCGAACGTGCAAT
LOC_Os03g63420
Os.50912.1.S1_at--994--5451Chr03:35771280..35771304 (25 bp)
GAACGTGCAATTGTACTCATGACTA
LOC_Os03g63420
Os.50912.1.S1_at--919--2251Chr03:35771326..35771350 (25 bp)
AAATACTTCCTGTTGCAACACTCGG
LOC_Os03g63420
Os.50912.1.S1_at--789--2471Chr03:35771342..35771366 (25 bp)
AACACTCGGATGTCACAGCTCTAAA
LOC_Os03g63420
Os.50912.1.S1_at--466--1571Chr03:35771358..35771382 (25 bp)
AGCTCTAAATGTCTGGATCTCTAAA
LOC_Os03g63420
Os.50912.1.S1_at--1132--2971Chr03:35771381..35771405 (25 bp)
AATGTCTGGATGGTATTCTCTTATA
LOC_Os03g63420
Os.50912.1.S1_at--671--1371Chr03:35771405..35771429 (25 bp)
AGAGCTGAGGCGATGATCTTGTACC
LOC_Os03g63420
Target Sequence 
TGGTGCAGATACTCCGGTCGCTGGACGTGCCCTTCGAGACGCTCGACGTGCTCGCCAACGAGGCGCTCCGCCAGGGGCTC
AAGGAGTACTCCAGCTGGCCCACCTTCCCGCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGA
TGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTATCTTAGTATAAACGTCGAAACACACCATAGA
GTACATATAAATGGTATATGGTCCTTTACGATGTACTCTTCAGCCATGACAAAGAACTGGTGATGCTAAGATTGTCAACA
GTTCAATTCATCAAGCAGTGAGGTCCAACTCGAACGTGCAATTGTACTCATGACTAATAAATTTTAATATTGATGACAAA
TACTTCCTGTTGCAACACTCGGATGTCACAGCTCTAAATGTCTGGATCTCTAAATGTCTGGATGGTATTCTCTTATAGAG
CTGAGGCGATGATCTTGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis