Browse Element(s) Details


Os.20351.1.S1_at

Description gb:AK067191.1
DB_XREF= gi:32977209
TID=Os.20351.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095N12, full insert sequence.
FL= gb:AK067191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20351.1.S1_at--1105--2911Chr03:35745825..35745844 (20 bp)
AAGGAAGGTCTCTGCTATGGAAAAC
LOC_Os03g63360
Os.20351.1.S1_at--354--9811Chr03:35745785..35745809 (25 bp)
TAACTTTTGTTATCCCTGGCCTTCT
LOC_Os03g63360
Os.20351.1.S1_at--100--8491Chr03:35745603..35745781 (25 bp)
TGGACACCTGTCTGGTCTAATGGAC
LOC_Os03g63360
Os.20351.1.S1_at--273--831Chr03:35745545..35745569 (25 bp)
ATGGTTCTCTTCACTGTATTCGCAG
LOC_Os03g63360
Os.20351.1.S1_at--1118--1411Chr03:35745518..35745542 (25 bp)
AGAAAATTCCAGCAGCCCATCAAGG
LOC_Os03g63360
Os.20351.1.S1_at--6--9652Chr11:24124795..24124883 (25 bp)
TCAGTTTTTATGTTCAACGCCCTCC
NONE
Os.20351.1.S1_at--628--1491Chr03:35745266..35745290 (25 bp)
AGCACAGCAGCTTTAGTACGTGTAC
LOC_Os03g63360
Os.20351.1.S1_at--1075--3291Chr03:35745198..35745222 (25 bp)
CACAGATACCGGCACATGTCAGTAA
LOC_Os03g63360
Os.20351.1.S1_at--692--8871Chr03:35745078..35745102 (25 bp)
TGATGGATCTCCTCTGGGTATCTGA
LOC_Os03g63360
Os.20351.1.S1_at--967--7031Chr03:35745033..35745057 (25 bp)
GTACAACTGTCTGTTCTCATGTGAT
LOC_Os03g63360
Os.20351.1.S1_at--47--8691Chr03:35745014..35745038 (25 bp)
TGTGATTATCTTCTCTGTGCCTTAC
LOC_Os03g63360
Target Sequence 
AAGGAAGGTCTCTGCTATGGAAAACTGGAAGCTGGTATTTTAACTTTTGTTATCCCTGGCCTTCTTCTTGGACACCTGTC
TGGTCTAATGGACAACGGAACAAAAGCCGGCCTTTTAGGAGTTTGGATGGTTCTCTTCACTGTATTCGCAGCAAGAAAAT
TCCAGCAGCCCATCAAGGATGACATTGGTGACAAATCAGTTTTTATGTTCAACGCCCTCCCTGAAGAAGAAAAGAAGGCC
TTGATACAGAAGCTCGAGATGCAAACTGAGACCGATGGCTGAAACCAGCACAGCAGCTTTAGTACGTGTACGTCCAAGGA
AGTATATGCAATTGATGTACATGTATGGTAGTTTCACAGATACCGGCACATGTCAGTAAGAGTAGTAACTCAGTTTATAC
ATAGGAATGAGAATGTACTAGCTAGAGTAATTGCGATGTGTAGTTGCAAATCAGATATAAATATATATACATGTTGATGG
ATCTCCTCTGGGTATCTGATCAGAGAGGGGTCTTACCCTGTACAACTGTCTGTTCTCATGTGATTATCTTCTCTGTGCCT
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis