Browse Element(s) Details


Os.27606.1.S1_at

Description gb:AK121930.1
DB_XREF= gi:37991553
TID=Os.27606.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106K22, full insert sequence.
FL= gb:AK121930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6333011/11aspartate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27606.1.S1_at--275--1251Chr03:35733601..35733625 (25 bp)
AGTTGTTCATCTACTGCAGCACAGG
LOC_Os03g63330
Os.27606.1.S1_at--948--1491Chr03:35733618..35733642 (25 bp)
AGCACAGGTCTATCATCTCACTGAT
LOC_Os03g63330
Os.27606.1.S1_at--441--8371Chr03:35733861..35733885 (25 bp)
GGCGTTAACGTCCAGATGATCTCAC
LOC_Os03g63330
Os.27606.1.S1_at--1089--5531Chr03:35734021..35734045 (25 bp)
GAAACAGTGTATACAGGCCCTTCAT
LOC_Os03g63330
Os.27606.1.S1_at--626--8411Chr03:35734036..35734060 (25 bp)
GGCCCTTCATTCAGCATTCTTTGAG
LOC_Os03g63330
Os.27606.1.S1_at--365--6431Chr03:35734091..35734115 (25 bp)
GATCTTCAACACAATGGCTCTCCTG
LOC_Os03g63330
Os.27606.1.S1_at--418--2531Chr03:35734142..35734166 (25 bp)
AACTAGTCGACTTAGCATTTCCTGC
LOC_Os03g63330
Os.27606.1.S1_at--210--8291Chr03:35734211..35734235 (25 bp)
GGCATATAGTCATTTAGGCCACCTA
LOC_Os03g63330
Os.27606.1.S1_at--759--91Chr03:35734249..35734273 (25 bp)
ATTCCCTGGTGTTGTAAGAGCCCTA
LOC_Os03g63330
Os.27606.1.S1_at--49--6471Chr03:35734295..35734319 (25 bp)
GATAATCACGCATAGCAGGCTCACT
LOC_Os03g63330
Os.27606.1.S1_at--1100--3071Chr03:35734340..35734364 (25 bp)
AATACCAGCGGTGCGATCGTAAATA
LOC_Os03g63330
Target Sequence 
AGTTGTTCATCTACTGCAGCACAGGTCTATCATCTCACTGATAGGGAATGTACAGAGATCGTCATTGATTCTTGAGAAGG
CTTTCAATGTTCTACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGGTGAACATTTCATTGGTG
GTCCATGATAGCGAGGCGAAACAGTGTATACAGGCCCTTCATTCAGCATTCTTTGAGAACGGTTTCTTGTCAGAAGTTGA
GGAAGAGGATCTTCAACACAATGGCTCTCCTGTGAGCCCAAATGGTGTCATTTACGGAAACTAGTCGACTTAGCATTTCC
TGCTATTGTTGTATCTTTGGAATTTGGATAGGTTTAAAGGTGATTCAGGCATATAGTCATTTAGGCCACCTAGGTGAAAT
GGTGAATTCCCTGGTGTTGTAAGAGCCCTACAAGGAGCACCCTGTGTTAATGATAATCACGCATAGCAGGCTCACTTATA
ATGTTAAGTTTGCTGCAATACCAGCGGTGCGATCGTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis