Browse Element(s) Details


Os.25462.1.S1_at

Description gb:AK105776.1
DB_XREF= gi:32990985
TID=Os.25462.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative reductase (OSJNBb0096M04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F08, full insert sequence.
FL= gb:AK105776.1 gb:AK068201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6329011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25462.1.S1_at--382--1871Chr03:35709161..35709185 (25 bp)
ACGAGTCCCGGTACATGACTGGCAG
LOC_Os03g63290
Os.25462.1.S1_at--798--5731Chr03:35709145..35709169 (25 bp)
GACTGGCAGCACCATATTCGTGGAT
LOC_Os03g63290
Os.25462.1.S1_at--511--611Chr03:35709093..35709117 (25 bp)
ATGCGCTCCTTCATGTAGATCATCA
LOC_Os03g63290
Os.25462.1.S1_at--1162--8751Chr03:35709080..35709104 (25 bp)
TGTAGATCATCACATCACCGTACGT
LOC_Os03g63290
Os.25462.1.S1_at--926--9231Chr03:35708999..35709023 (25 bp)
TCCATCATGGGTTTCTGCTCTGTAG
LOC_Os03g63290
Os.25462.1.S1_at--669--10591Chr03:35708987..35709011 (25 bp)
TTCTGCTCTGTAGCTGTGTGTTCAG
LOC_Os03g63290
Os.25462.1.S1_at--1158--3171Chr03:35708957..35708981 (25 bp)
CAATTTGCTGTCTGTAATGATCGAG
LOC_Os03g63290
Os.25462.1.S1_at--165--6051Chr03:35708909..35708933 (25 bp)
GAGATTAGTATGTACGCCGCAGGCA
LOC_Os03g63290
Os.25462.1.S1_at--941--2571Chr03:35708885..35708909 (25 bp)
AACGTGCCATGATCTGAGCCTTCTG
LOC_Os03g63290
Os.25462.1.S1_at--239--5871Chr03:35708870..35708894 (25 bp)
GAGCCTTCTGGTATATGTACGATCT
LOC_Os03g63290
Os.25462.1.S1_at--644--6991Chr03:35708854..35708878 (25 bp)
GTACGATCTCGGATACGTCAGCTCT
LOC_Os03g63290
Target Sequence 
ACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTC
ATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGA
GCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACA
AAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGA
TACGTCAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis