Browse Element(s) Details


Os.44933.2.S1_x_at

Description gb:NM_185179.1
DB_XREF= gi:34897443
TID=Os.44933.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0096M04.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0096M04.40), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6326010/11pentatricopeptide, putative, expressed
LOC_Os06g016502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44933.2.S1_x_at--185--611Chr03:35685520..35685544 (25 bp)
ATGCCCTTTGAAGCTGATGCGGTTA
LOC_Os03g63260
Os.44933.2.S1_x_at--983--1311Chr03:35685623..35685647 (25 bp)
AGATGGAATCGTCACATCCCAGCTT
LOC_Os03g63260
Os.44933.2.S1_x_at--154--551Chr03:35685638..35686122 (25 bp)
ATCCCAGCTTCACACTTAGTTACTT
LOC_Os03g63260
Os.44933.2.S1_x_at--770--6771Chr03:35686116..35686140 (25 bp)
GTTACTTCCATGTGTTGTGTTGTCA
LOC_Os03g63260
Os.44933.2.S1_x_at--507--6571Chr03:35686223..35686247 (25 bp)
GATTCCTCTATCAGGGAGTTCCATG
LOC_Os03g63260
Os.44933.2.S1_x_at--257--5351Chr03:35686261..35686285 (25 bp)
GAAGTTGCTTATTTCACTGCTTAAA
LOC_Os03g63260
Os.44933.2.S1_x_at--349--10811Chr03:35686289..35686313 (25 bp)
TTGTGCCGACACTATGGAAGCTCCG
LOC_Os03g63260
Os.44933.2.S1_x_at--406--10412Chr03:35686320..35686344 (25 bp)
TTTTGGGTCTGATCCATCGCAGGAG
LOC_Os03g63260
Os.44933.2.S1_x_at--336--191Chr03:35686627..35686651 (25 bp)
ATTTCTTTCGAATTCTTGGTTACAG
LOC_Os03g63260
Os.44933.2.S1_x_at--194--8092Chr03:35686730..35686754 (25 bp)
GGAGCCATTGTCCATTGCATGAAAA
LOC_Os03g63260
Os.44933.2.S1_x_at--932--10491NONE
TTCAGGCTACTGCTAAGGAGGTTCA
NONE
Target Sequence 
ATGCCCTTTGAAGCTGATGCGGTTAGCTGGACAACTGTTATTGGTGGATGCAAAGCTCAGGGCAATGAGGCCATGATGCG
GAAGGTGGCGAAGAAGCTGATGGAGATGGAATCGTCACATCCCAGCTTCACACTTAGTTACTTCCATGTGTTGTGTTGTC
AACCTATTCCTGGCCCCCATGTTGGTGGAAGTGCTGCAGCAAAGGATGTGAACAAGTGGCTTGATGAGATTATTGGAGGC
TATGATTCCTCTATCAGGGAGTTCCATGGAGGAGATGATCAGAAGTTGCTTATTTCACTGCTTAAAATATTGTGCCGACA
CTATGGAAGCTCCGTTCACCTTTTGGGTCTGATCCATCGCAGGAGGAATATTGAATTTCTTTCGAATTCTTGGTTACAGG
GTATAGCTGGTCCAGAGATGGCAGTGACAAAACTTTTCTCATCTTGTAAGAGCAGTGGTGCTCATAAGGGAGAGTATGGA
GCCATTGTCCATTGCATGAAAAACATTCCGTCAGAAAACCAGATTCAGGCTACTGCTAAGGAGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44933.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis