Browse Element(s) Details


Os.10657.1.S1_at

Description gb:AK105978.1
DB_XREF= gi:32991187
TID=Os.10657.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative regulatory protein (OSJNBb0096M04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F09, full insert sequence.
FL= gb:AK104518.1 gb:AK105978.1 gb:AK071606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6328011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10657.1.S1_at--548--2391Chr03:35707347..35707371 (25 bp)
AAACACGGGCTTCTTCTACGTGAAG
LOC_Os03g63280
Os.10657.1.S1_at--953--1671Chr03:35707445..35707469 (25 bp)
AGCCGGTGTTCAACCACATCAAGAA
LOC_Os03g63280
Os.10657.1.S1_at--235--911Chr03:35707496..35707520 (25 bp)
AGGTTCAGTACCTGGACACGGCCTA
LOC_Os03g63280
Os.10657.1.S1_at--1053--2091Chr03:35707520..35707544 (25 bp)
ACATCGGCGGATTCTGCAGCTACGG
LOC_Os03g63280
Os.10657.1.S1_at--471--8911Chr03:35707553..35707577 (25 bp)
TGAGCAAGATCTGCACCATGCACGC
LOC_Os03g63280
Os.10657.1.S1_at--145--8431Chr03:35707591..35707615 (25 bp)
GGCCTCCAATCCAAGATCAGTGATC
LOC_Os03g63280
Os.10657.1.S1_at--1031--6411Chr03:35707612..35707636 (25 bp)
GATCTCAAGGGTGTTCTTGCTGACT
LOC_Os03g63280
Os.10657.1.S1_at--525--2671Chr03:35707669..35707693 (25 bp)
AAGCCCAATGCCAGGTGGACTGTGC
LOC_Os03g63280
Os.10657.1.S1_at--800--10251Chr03:35707715..35707739 (25 bp)
TTTGATTGTCGATCGGGCAGTATCT
LOC_Os03g63280
Os.10657.1.S1_at--1118--6891Chr03:35707734..35707758 (25 bp)
GTATCTGGTGTTGTAGGCTACGTAC
LOC_Os03g63280
Os.10657.1.S1_at--519--10191Chr03:35707844..35707868 (25 bp)
TATATTACTGTATACCTGACGGCAG
LOC_Os03g63280
Target Sequence 
AAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGC
ACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTAC
CTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTG
CATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGG
CAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTG
TAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTG
ATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis