Browse Element(s) Details


Os.48050.1.S1_at

Description gb:AK062083.1
DB_XREF= gi:32972101
TID=Os.48050.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G01, full insert sequence.
FL= gb:AK062083.1 gb:AK099525.1 gb:AK061542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6337011/11Polyphosphoinositide-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48050.1.S1_at--588--7651Chr03:35749440..35749464 (25 bp)
GGGAGGGTGTTCTTGATCCATGTCC
LOC_Os03g63370
Os.48050.1.S1_at--756--751Chr03:35749421..35749445 (25 bp)
ATGTCCCCTACGTGTTCATGGCGGC
LOC_Os03g63370
Os.48050.1.S1_at--169--6751Chr03:35749408..35749432 (25 bp)
GTTCATGGCGGCCTGGAAGATCATC
LOC_Os03g63370
Os.48050.1.S1_at--697--10171Chr03:35749243..35749267 (25 bp)
TATTAATGGCGCCACCGAATCCAAT
LOC_Os03g63370
Os.48050.1.S1_at--195--3051Chr03:35749221..35749245 (25 bp)
AATCGCCGCCGGTAGATAGCTCTCG
LOC_Os03g63370
Os.48050.1.S1_at--878--10111Chr03:35749175..35749199 (25 bp)
TATGATGTATGTACACCCATCTCGA
LOC_Os03g63370
Os.48050.1.S1_at--1041--6891Chr03:35749132..35749156 (25 bp)
GTATGTAGCACGTGTACGGTGTACG
LOC_Os03g63370
Os.48050.1.S1_at--128--8071Chr03:35749080..35749104 (25 bp)
GGACAGGAGGACACTACGAATTCGA
LOC_Os03g63370
Os.48050.1.S1_at--929--3151Chr03:35749062..35749086 (25 bp)
AATTCGAGGACGTACGTGCGTGCTA
LOC_Os03g63370
Os.48050.1.S1_at--504--9931Chr03:35749050..35749074 (25 bp)
TACGTGCGTGCTATATACATTGAAT
LOC_Os03g63370
Os.48050.1.S1_at--749--5211Chr03:35749029..35749053 (25 bp)
GAATTACGGCTCTGAACAGTACTGA
LOC_Os03g63370
Target Sequence 
GGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTCATCGACGACAACAC
CAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGCCACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCG
AGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCT
CTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACG
TGTACGGTGTACGTGAATGTATGTTACTAGNATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTG
CTATATACATTGAATTACGGCTCTGAACAGTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis