Browse Element(s) Details


Os.5245.1.S1_at

Description gb:AK101366.1
DB_XREF= gi:32986575
TID=Os.5245.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035L04, full insert sequence.
FL= gb:AK101366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5245.1.S1_at--622--2951Chr03:35758065..35758089 (25 bp)
AAGGCCGACTTCATCACCTACTACG
LOC_Os03g63380
Os.5245.1.S1_at--936--4011Chr03:35758019..35758042 (24 bp)
CGTCAAATGGGTCTTCTACACCGGG
LOC_Os03g63380
Os.5245.1.S1_at--150--2611Chr03:35756552..35756576 (25 bp)
AACGCCCTCATCTCTGAACCTGTTG
LOC_Os03g63380
Os.5245.1.S1_at--974--10711Chr03:35756530..35756554 (25 bp)
TTGCTGGGCATGATAAGGGCTTCTT
LOC_Os03g63380
Os.5245.1.S1_at--473--8291Chr03:35756513..35756537 (25 bp)
GGCTTCTTCCCCAGGAGAGAATTCT
LOC_Os03g63380
Os.5245.1.S1_at--847--5951Chr03:35756497..35756521 (25 bp)
GAGAATTCTGAGAGGCTAGCTGTAT
LOC_Os03g63380
Os.5245.1.S1_at--1107--6011Chr03:35756488..35756512 (25 bp)
GAGAGGCTAGCTGTATTCTACTATT
LOC_Os03g63380
Os.5245.1.S1_at--263--5991Chr03:35756456..35756480 (25 bp)
GAGACCCAAGACCTTAATTAGTATG
LOC_Os03g63380
Os.5245.1.S1_at--152--1391Chr03:35756448..35756472 (25 bp)
AGACCTTAATTAGTATGGCCACCAT
LOC_Os03g63380
Os.5245.1.S1_at--604--3531Chr03:35756426..35756450 (25 bp)
CATGCTGCTAATCGTCTGTCTGTAT
LOC_Os03g63380
Os.5245.1.S1_at--595--4771Chr03:35756423..35756447 (25 bp)
GCTGCTAATCGTCTGTCTGTATTGT
LOC_Os03g63380
Target Sequence 
AAGGCCGACTTCATCACCTACTACGAGGACACCCTCACCAAACGCCCCGTCAAATGGGTCTTCTACACCGGGAGGACTAG
CCATGTGATGAGCTTTGAGGAGGGTGCTGTGCTGGAGGACGCAGAATGGCAGGCACCTGAATACTGCTTCGGCAAGGGTG
ATGAGACTGAAACATCCAACGACAACGCCCTCATCTCTGAACCTGTTGCTGGGCATGATAAGGGCTTCTTCCCCAGGAGA
GAATTCTGAGAGGCTAGCTGTATTCTACTATTNATCTGGTGAGACCCAAGACCTTAATTAGTATGGCCACCATGCTGCTA
ATCGTCTGTCTGTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis