Browse Element(s) Details


OsAffx.13592.1.S1_at

Description tigr:9631.m06269
TID=OsAffx.13592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6335011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13592.1.S1_at--724--2991Chr03:35738559..35738583 (25 bp)
AATGACCATGGTTCTTCAGACGATG
LOC_Os03g63350
OsAffx.13592.1.S1_at--288--9691Chr03:35738594..35738618 (25 bp)
TCACGATATTGTTGCCATTCCTGGA
LOC_Os03g63350
OsAffx.13592.1.S1_at--499--8511Chr03:35738651..35738675 (25 bp)
TGGAGGAGGGTTCCAATTCCTTGTT
LOC_Os03g63350
OsAffx.13592.1.S1_at--571--10831Chr03:35738683..35738707 (25 bp)
TTGGCAGTGATTCTTCAAACGATGA
LOC_Os03g63350
OsAffx.13592.1.S1_at--150--3151Chr03:35738743..35738980 (25 bp)
AATTCCTTGTTCAGGTTGCCATACC
LOC_Os03g63350
OsAffx.13592.1.S1_at--377--3091Chr03:35739057..35739081 (25 bp)
AATAGCAAGAACCTTCCCCTAACAG
LOC_Os03g63350
OsAffx.13592.1.S1_at--634--5071Chr03:35739081..35739105 (25 bp)
GCAGCCCTCCTCAAGTTTATTGATG
LOC_Os03g63350
OsAffx.13592.1.S1_at--316--10071Chr03:35739124..35739148 (25 bp)
TAGTGCCATCAGTAGTCTTCCTCAA
LOC_Os03g63350
OsAffx.13592.1.S1_at--1155--10411Chr03:35739177..35739201 (25 bp)
TTAAAGCCATCAGTAGTCTTCCCCA
LOC_Os03g63350
OsAffx.13592.1.S1_at--590--1151Chr03:35739191..35739215 (25 bp)
AGTCTTCCCCAGTTCTCAAATTTCT
LOC_Os03g63350
OsAffx.13592.1.S1_at--376--3451Chr03:35739245..35739269 (25 bp)
CAGTACCAGTCATCCTGCAGTGCAT
LOC_Os03g63350
Target Sequence 
AATGACCATGGTTCTTCAGACGATGAAGGAGCCATTCACGATATTGTTGCCATTCCTGGAGAAGGTTTTCAATTCAATAT
TATTGCTATTACTGGAGGAGGGTTCCAATTCCTTGTTGAGGTATTTGGCAGTGATTCTTCAAACGATGAAATTCAGAATG
TTGCTATTCCTGGAAGAGGGTTCCAATTCCTTGTTCAGGTTGCCATACCAGTCGCCCCCACATTCAAGGTGTTCATGGCA
TTGACAAAGTTTGAAGGGTTCACTGCACCCCCTTACAGCCCTAACAATAGCAAGAACCTTCCCCTAACAGCAGCCCTCCT
CAAGTTTATTGATGCGGTGAATCAAGGCTCCTTAGTGCCATCAGTAGTCTTCCTCAAGTTTATTGATGCGGTGAATCAAG
GCTCCTTAAAGCCATCAGTAGTCTTCCCCAGTTCTCAAATTTCTGGATTCAATAGATCAAGGCTCCTTACCACCAGTACC
AGTCATCCTGCAGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis