Browse Element(s) Details


Os.11477.1.S1_at

Description gb:AK062526.1
DB_XREF= gi:32972544
TID=Os.11477.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D10, full insert sequence.
FL= gb:AK062526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6339011/11Chemocyanin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11477.1.S1_at--282--2571Chr03:35760004..35760028 (25 bp)
AACGCCGCCGGGTACAAGGGCTGCA
LOC_Os03g63390
Os.11477.1.S1_at--99--7271Chr03:35760218..35760242 (25 bp)
GTCCATCTCAACCAGCTGCTTATTA
LOC_Os03g63390
Os.11477.1.S1_at--723--9851Chr03:35760251..35760275 (25 bp)
TACAAATGTTTGTCGATCGTGTGTG
LOC_Os03g63390
Os.11477.1.S1_at--902--10811Chr03:35760260..35760284 (25 bp)
TTGTCGATCGTGTGTGTTCTAACCA
LOC_Os03g63390
Os.11477.1.S1_at--863--6711Chr03:35760275..35760299 (25 bp)
GTTCTAACCACCATCAGCTGATTTA
LOC_Os03g63390
Os.11477.1.S1_at--560--391Chr03:35760287..35760311 (25 bp)
ATCAGCTGATTTATAATTCTACGAA
LOC_Os03g63390
Os.11477.1.S1_at--1016--3711Chr03:35760305..35760329 (25 bp)
CTACGAATGAAGAATACGATCCAAT
LOC_Os03g63390
Os.11477.1.S1_at--794--311Chr03:35760318..35760342 (25 bp)
ATACGATCCAATGCATCTATGCATG
LOC_Os03g63390
Os.11477.1.S1_at--176--651Chr03:35760340..35760364 (25 bp)
ATGCATACACACATGGATCAATATA
LOC_Os03g63390
Os.11477.1.S1_at--1147--6631Chr03:35760370..35760394 (25 bp)
GTTGTACACTTCTTTGAGTGACGGA
LOC_Os03g63390
Os.11477.1.S1_at--908--7351Chr03:35760387..35760411 (25 bp)
GTGACGGATGTTGTATCCGGTGAAA
LOC_Os03g63390
Target Sequence 
AACGCCGCCGGGTACAAGGGCTGCACCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCT
CGCCCGCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCT
AGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTAT
ATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGA
TCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATC
CGGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis