Browse Element(s) Details


Os.10604.1.S2_at

Description gb:AK071162.1
DB_XREF= gi:32981185
TID=Os.10604.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN5 mRNA for 26S proteasome regulatory particle non-ATPase subunit5, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081N11, full insert sequence.
FL= gb:AK105457.1 gb:AK073581.1 gb:AK071162.1 gb:AK104846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6343011/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10604.1.S2_at--687--7831Chr03:35773475..35773499 (25 bp)
GGTAAACTCAAAGTCGCTGATTGCG
LOC_Os03g63430
Os.10604.1.S2_at--445--3871Chr03:35773459..35773483 (25 bp)
CTGATTGCGAAGATTGACAGGCCAA
LOC_Os03g63430
Os.10604.1.S2_at--910--2971Chr03:35773436..35773460 (25 bp)
AATGGGTGTTGTATGCTTCCGCACA
LOC_Os03g63430
Os.10604.1.S2_at--1005--4911Chr03:35773422..35773446 (25 bp)
GCTTCCGCACAGCACAAGACAGTAA
LOC_Os03g63430
Os.10604.1.S2_at--845--2611Chr03:35773276..35773300 (25 bp)
AACCATTTTGCATTGGCTGGCTTGC
LOC_Os03g63430
Os.10604.1.S2_at--250--3831Chr03:35773242..35773266 (25 bp)
CTGCCTGGCCTTCTATGGTCAAATT
LOC_Os03g63430
Os.10604.1.S2_at--140--1552Chr03:35773182..35773206 (25 bp)
AGCATCACCTGTTTGCTTTGGGAAC
LOC_Os03g63430
Os.10604.1.S2_at--537--711Chr03:35773147..35773171 (25 bp)
ATGATCTTAAATACTGTGACCACAG
LOC_Os03g63430
Os.10604.1.S2_at--826--10431Chr03:35773004..35773028 (25 bp)
TTAGGTTCTGCAGATGCGCTGGTTC
LOC_Os03g63430
Os.10604.1.S2_at--810--4571Chr03:35772989..35773013 (25 bp)
GCGCTGGTTCTCAATATGATCTGAT
LOC_Os03g63430
Os.10604.1.S2_at--534--8851Chr03:35772973..35772997 (25 bp)
TGATCTGATCTGTAACGCGTTCGTT
LOC_Os03g63430
Target Sequence 
GGTAAACTCAAAGTCGCTGATTGCGAAGATTGACAGGCCAATGGGTGTTGTATGCTTCCGCACAGCACAAGACAGTAATG
GTATACTCAATTCCTGGGCGGCGAACCTCGAGAAACTCCTCGATCTTGTTGAGAAGAGCTGTCACCAAATACACAAGGAG
ACGATGATCCATAAGGCGGTGTTGAAAGCTTAATCTGTAAACCATTTTGCATTGGCTGGCTTGCTTAGGTTCTCTGCCTG
GCCTTCTATGGTCAAATTTTACAATCACAGGACGTCAAGCTTTTCTCAGCTCAAGCATCACCTGTTTGCTTTGGGAACTC
GTGCGTGAATGATCTTAAATACTGTGACCACAGAATGATGACATATTATTTGTTGTTGGGGTTCAATCGCTGTCCTCCAA
TTTGCTTAACATGTGTATCTTCCCGAATATTATTTGAATTCTAGATTATTCAATCAGATGCCTGGCTTGTTTTAGGTTCT
GCAGATGCGCTGGTTCTCAATATGATCTGATCTGTAACGCGTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10604.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis