Browse Element(s) Details


Os.11424.1.S1_x_at

Description gb:AK100030.1
DB_XREF= gi:32985239
TID=Os.11424.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147L20, full insert sequence.
FL= gb:AK100030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g634707/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11424.1.S1_x_at--5--7331NONE
GTGCAGCCAAAAGGACCAGCCATCT
NONE
Os.11424.1.S1_x_at--210--5132Chr06:12188458..12188482 (25 bp)
GCACAACAGATTGCTTTTCTCCTAA
NONE
Os.11424.1.S1_x_at--224--10313Chr08:25240048..25240072 (25 bp)
TTTCTCCTAAGCATAGGTGGCCTGA
NONE
Os.11424.1.S1_x_at--454--2133Chr08:25240117..25240141 (25 bp)
ACAGTGCTGATAACGGCGACTCTCA
NONE
Os.11424.1.S1_x_at--1005--4591Chr06:12188557..12188581 (25 bp)
GCGACTCTCAAGTTTCACTGATGAA
NONE
Os.11424.1.S1_x_at--361--1213Chr08:25240845..25240869 (25 bp)
AGTTTTCTACCAGTGAAGCCTCATA
NONE
Os.11424.1.S1_x_at--754--9192Chr06:12189323..12189347 (25 bp)
TGCCATGGTCTGATGTATGCTTTGT
NONE
Os.11424.1.S1_x_at--264--1013Chr08:25240972..25240996 (25 bp)
AGGATTTGCATTCTTCTGCTGTCAT
NONE
Os.11424.1.S1_x_at--934--4733Chr08:25240989..25241013 (25 bp)
GCTGTCATGGGTGTTGCTGGATTAC
NONE
Os.11424.1.S1_x_at--251--6552Chr08:25241055..25241079 (25 bp)
GATTATACCATTTGATCTGGCAGCT
NONE
Os.11424.1.S1_x_at--330--2872Chr08:25241082..25241106 (25 bp)
AAGGGCAGGGTCCAAGATTGTATTA
NONE
Target Sequence 
GTGCAGCCAAAAGGACCAGCCATCTCCTTGCTTAGCACAACAGATTGCTTTTCTCCTAAGCATAGGTGGCCTGAAGATGT
AGCTTGGCATCCAGATGGTGAATTAATTTTTGCAATGTACAGTGCTGATAACGGCGACTCTCAAGTTTCACTGATGAATC
ATAGCATATCAGGACAAAAGAAAGTTAGTTTTCTACCAGTGAAGCCTCATACCAAGGAAATTATTAACAACATTAATTTT
ATGCCATGGTCTGATGTATGCTTTGTGACTGGTGGAAGTGACCATGCTGTCAACAAAAAGATGATTCATGGAACCACACN
AAAGTGCACAAGGATTTGCATTCTTCTGCTGTCATGGGTGTTGCTGGATTACAGCAAAAAAAAATGCAATATTATCAGTT
GGCAGTGACAAGAGGATTATACCATTTGATCTGGCAGCTNGAAGGGCAGGGTCCAAGATTGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11424.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis