Browse Element(s) Details


OsAffx.25808.1.S1_at

Description tigr:9631.m06278
TID=OsAffx.25808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative flowering-time related protein (FRI-like)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6344011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0010048biological_processvernalization response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25808.1.S1_at--91--1231Chr03:35780359..35780383 (25 bp)
AGTTCCCGTCGCAGGAGATCTTCGA
LOC_Os03g63440
OsAffx.25808.1.S1_at--438--4511Chr03:35780415..35780439 (25 bp)
GCCGAGGTGCTCAAATGCTCCAAGC
LOC_Os03g63440
OsAffx.25808.1.S1_at--695--2691Chr03:35780451..35780582 (25 bp)
AAGCTGCGTGATGTTGTTGCTCATA
LOC_Os03g63440
OsAffx.25808.1.S1_at--1051--8971Chr03:35780632..35780656 (25 bp)
TGAACTTCAGGATGCATTCCCGCTT
LOC_Os03g63440
OsAffx.25808.1.S1_at--922--3671Chr03:35780654..35780678 (25 bp)
CTTTCTGCGATAGCGACTTGTGTCA
LOC_Os03g63440
OsAffx.25808.1.S1_at--389--2151Chr03:35780719..35780740 (22 bp)
ACAGCACCATCTGCCAGGATCGAAA
LOC_Os03g63440
OsAffx.25808.1.S1_at--469--5391Chr03:35782083..35782107 (25 bp)
GAAGCTAGCTCTACTGAGATTACTA
LOC_Os03g63440
OsAffx.25808.1.S1_at--401--8171Chr03:35782179..35782203 (25 bp)
GGAACAAAGCCTCGCAAAGCCACAT
LOC_Os03g63440
OsAffx.25808.1.S1_at--689--2651Chr03:35782195..35782219 (25 bp)
AAGCCACATCAAGCATTTACAGGAA
LOC_Os03g63440
OsAffx.25808.1.S1_at--1129--6931Chr03:35782252..35782276 (25 bp)
GTAGAATGCACTCGAGGGCCTAAAT
LOC_Os03g63440
OsAffx.25808.1.S1_at--439--2291Chr03:35782273..35782297 (25 bp)
AAATGTTCATACACTCCAGCTGCTT
LOC_Os03g63440
Target Sequence 
AGTTCCCGTCGCAGGAGATCTTCGAGCTGTTGCATGCTGCTGGCGGCCTGGCCTGCGCCGAGGTGCTCAAATGCTCCAAG
CATTTCTTAGATAAGCTGCGTGATGTTGTTGCTCATATGCTGAATAGAGGAATTTATCATCAAACCGTTGCTACAATAAT
TGCATTTGAACTTCAGGATGCATTCCCGCTTTCTGCGATAGCGACTTGTGTCATTGAGAGAGTTGGGCGTACAAAGGATC
AAGACAGTCAAGAACAGCACCATCTGCCAGGATCGAAAGAGAATGATGAAGAGAAGCTAGCTCTACTGAGATTACTATCC
AAATACGTGGAGGATCCAAAACAATGTTCCACAGAGAATTTCAGCATTGCTGATAGGATTGCGATGCTGGAACAAAGCCT
CGCAAAGCCACATCAAGCATTTACAGGAACAAAGCGCAAGAGGACAGCACAGGAGGACAGTGTAGAATGCACTCGAGGGC
CTAAATGTTCATACACTCCAGCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis