Browse Element(s) Details


OsAffx.25809.1.S1_at

Description tigr:9631.m06293
TID=OsAffx.25809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative phosphoesterase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6358011/11phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed
LOC_Os03g63630NANA3+35867160..35873312transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0005886cellular_componentplasma membrane
GO:0004629molecular_functionphospholipase C activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25809.1.S1_at--371--9711Chr03:35846879..35846903 (25 bp)
TCAAGAGCTTCCTGACCAACCGCGA
LOC_Os03g63580
OsAffx.25809.1.S1_at--629--2771Chr03:35846881..35846905 (25 bp)
AAGAGCTTCCTGACCAACCGCGACG
LOC_Os03g63580
OsAffx.25809.1.S1_at--1000--1511Chr03:35847014..35847038 (25 bp)
AGCAGGCGGCGCTGACGGAGTTCCA
LOC_Os03g63580
OsAffx.25809.1.S1_at--293--911Chr03:35847017..35847041 (25 bp)
AGGCGGCGCTGACGGAGTTCCAGGA
LOC_Os03g63580
OsAffx.25809.1.S1_at--176--4171Chr03:35847156..35847180 (25 bp)
CGCCTTCAAGGCATGGATGGACGAG
LOC_Os03g63580
OsAffx.25809.1.S1_at--928--3651Chr03:35847159..35847183 (25 bp)
CTTCAAGGCATGGATGGACGAGTGC
LOC_Os03g63580
OsAffx.25809.1.S1_at--151--4071Chr03:35847177..35847201 (25 bp)
CGAGTGCGACCGCTGCAGGAAGTGC
LOC_Os03g63580
OsAffx.25809.1.S1_at--883--8351Chr03:35847202..35847226 (25 bp)
GGCGAGGACGGGTCCCACATCCCCA
LOC_Os03g63580
OsAffx.25809.1.S1_at--238--9371Chr03:35847253..35847277 (25 bp)
TCGACGTCGTCCTCAGGCTCTAGCT
LOC_Os03g63580
OsAffx.25809.1.S1_at--1058--4811Chr03:35847269..35847293 (25 bp)
GCTCTAGCTCCTTTGCTTCCAAGTT
LOC_Os03g63580
OsAffx.25809.1.S1_at--1130--3671Chr03:35847279..35847303 (25 bp)
CTTTGCTTCCAAGTTGCTGTCTTGC
LOC_Os03g63580
Target Sequence 
TCAAGAGCTTCCTGACCAACCGCGACGCCTGGGCGGGCACCTTCGACGTCGTCCTCACGCGCGACGCGCCGCGCACCGAC
TGCCCCGCCACCCTGCCGGAGCCGGTGAAGATGAGGCCGGCGACGGAGGCGGCGGAGCAGGCGGCGCTGACGGAGTTCCA
GGAGGAGCTGGTGCAGCTGGGGGCGGTGCTCAACGGCGACCACGCCGACGAGGACGTGTACCCGCGCAAGCTGGTGGAGG
GGATGACGGTGGCGGAGGCGGCCAGCTACTGCAACGCCGCCTTCAAGGCATGGATGGACGAGTGCGACCGCTGCAGGAAG
TGCGGCGAGGACGGGTCCCACATCCCCACGGTGGTGAAGCCGCCGCCGCCGCCGTCGACGTCGTCCTCAGGCTCTAGCTC
CTTTGCTTCCAAGTTGCTGTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis