Browse Element(s) Details


Os.56029.1.S1_at

Description gb:AK109146.1
DB_XREF= gi:32994355
TID=Os.56029.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F04, full insert sequence.
FL= gb:AK109146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g404703/11DC1 domain-containing protein, putative, expressed
LOC_Os03g230001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56029.1.S1_at--950--1911Chr12:25007244..25007268 (25 bp)
ACGTGGCGTGCGTCATGGACATGCT
LOC_Os12g40470
Os.56029.1.S1_at--532--8531Chr12:25007259..25007283 (25 bp)
TGGACATGCTCGTCGAGAGCTGGAA
LOC_Os12g40470
Os.56029.1.S1_at--190--10651Chr12:25007471..25007495 (25 bp)
TTCGCGGCGCAGGTGGTCATCTCCG
LOC_Os12g40470
Os.56029.1.S1_at--115--6891Chr09:22496564..22496718 (25 bp)
GTATACACACGTACGTAGCCCACGT
NONE
Os.56029.1.S1_at--151--1651Chr12:25007644..25007668 (25 bp)
AGCCCACGTGGCAGAATTTAACTCG
NONE
Os.56029.1.S1_at--326--1971Chr12:25007664..25007688 (25 bp)
ACTCGTGCAATAACATTAACCCGTG
NONE
Os.56029.1.S1_at--663--7031Chr12:25007688..25007712 (25 bp)
GTACACGTCATCTAATCGCATCGGA
NONE
Os.56029.1.S1_at--976--4971Chr12:25007705..25007729 (25 bp)
GCATCGGAGCCGCACAATGTTGATC
NONE
Os.56029.1.S1_at--868--4116Chr12:25007715..25007739 (25 bp)
CGCACAATGTTGATCGGACGGCGTG
NONE
Os.56029.1.S1_at--122--1931Chr12:25007732..25007756 (25 bp)
ACGGCGTGGACGTGGATCGCAATCT
NONE
Os.56029.1.S1_at--1041--3611Chr12:25007758..25007782 (25 bp)
CTTGCGATCCAAGCCCGGAAGGGTG
NONE
Target Sequence 
ACGTGGCGTGCGTCATGGACATGCTCGTCGAGAGCTGGAACGGCGTCGGCCGCCACAAGGGCGGCGTCGCCGGCGGCGGC
AATGTGTACGACGGCGTGACGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGGTGATACGCGGCGCGGCGAAGAGCAGCCA
CGCGAGCAGGGGAGGGTCCTACTGGGGAAGGAAGGGGAAGGTAAAGCGGTGCTGCGAGATCGCCGGCTTCGCGGCGCAGG
TGGTCATCTCCGCCGTGCTCGGCGACCCCACCGCCCTCATCGCCGGCGTCATCGGCTCGCTCATCGCGCGGTGACCGGCG
CCGCCGCCGCCGCCTTCGCGCCGCGGCGGAGGGGGGTAAAAAAAAATGTAAATTAACTACCACGTATACACACGTACGTA
GCCCACGTGGCAGAATTTAACTCGTGCAATAACATTAACCCGTGTACACGTCATCTAATCGCATCGGAGCCGCACAATGT
TGATCGGACGGCGTGGACGTGGATCGCAATCTGCTTGCGATCCAAGCCCGGAAGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis