Browse Element(s) Details


Os.27326.1.A1_at

Description gb:AK100450.1
DB_XREF= gi:32985659
TID=Os.27326.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090P15, full insert sequence.
FL= gb:AK100450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g405008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27326.1.A1_at--11--311Chr12:25027048..25027072 (25 bp)
ATAGCTGCCCTATTTTATTGATGTC
LOC_Os12g40500
Os.27326.1.A1_at--1031--2611Chr12:25027151..25027175 (25 bp)
AACCCCATTATCTTGTTCATGTCTA
LOC_Os12g40500
Os.27326.1.A1_at--608--2811NONE
AAGTTGCGAACCTGCAGTTGCCTGA
NONE
Os.27326.1.A1_at--3--10692Chr12:25027230..25027250 (21 bp)
TTGCCTGACCACTGATAACTGACCA
LOC_Os12g40500
Os.27326.1.A1_at--831--4971Chr12:25027253..25027277 (25 bp)
GCATCTGCCTGCAACATCACAAGGA
LOC_Os12g40500
Os.27326.1.A1_at--309--6411Chr12:25027348..25027372 (25 bp)
GATCTGGATCAGAAGCTACCCTATT
LOC_Os12g40500
Os.27326.1.A1_at--353--2211NONE
ACAACTGTACTCCTTTTGTCTTTGC
NONE
Os.27326.1.A1_at--162--8251NONE
GGCACAGACAGTCATTCTCTGGTTA
NONE
Os.27326.1.A1_at--663--3031Chr12:25027495..25027519 (25 bp)
AATCCAGAGCTGTCCCATTTTTAAT
LOC_Os12g40500
Os.27326.1.A1_at--282--7071Chr12:25027524..25027548 (25 bp)
GTAAGGCAGCATGCTACCCCAGGAT
LOC_Os12g40500
Os.27326.1.A1_at--276--7391Chr12:25027552..25027576 (25 bp)
GTGAGCAGTTCTGTTCTGTCTGACA
LOC_Os12g40500
Target Sequence 
ATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATG
TGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTCATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTT
GAAGTTGCGAACCTGCAGTTGCCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAG
GAAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTGATCTGGATCAGAAGCTACC
CTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATGAATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCT
TTGCACGCTTAATAGACTGGCACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAA
GGCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27326.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis