Browse Element(s) Details


Os.53316.1.S1_at

Description gb:AK071949.1
DB_XREF= gi:32981972
TID=Os.53316.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013078M05, full insert sequence.
FL= gb:AK071949.1 gb:AK099006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4054011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53316.1.S1_at--515--6951Chr12:25049800..25049824 (25 bp)
GTAGAGCTTGCTTTAGGGCTATCAA
LOC_Os12g40540
Os.53316.1.S1_at--627--6411Chr12:25049772..25049796 (25 bp)
GATCTCTTCAGCAACCATTTTACAC
LOC_Os12g40540
Os.53316.1.S1_at--665--7711Chr12:25049637..25049661 (25 bp)
GGGTGCAGCTCTACCAATGAACACT
LOC_Os12g40540
Os.53316.1.S1_at--75--6111Chr12:25049608..25049632 (25 bp)
GAGTCCCATGCATATTTGATCCCCA
LOC_Os12g40540
Os.53316.1.S1_at--370--931Chr12:25049574..25049598 (25 bp)
AGGCATCTGTGGTGACTGGCTAACA
LOC_Os12g40540
Os.53316.1.S1_at--1151--2651Chr12:25049523..25049547 (25 bp)
AAGCGGAATGTCTCTTGCAAACCAT
LOC_Os12g40540
Os.53316.1.S1_at--412--2371Chr12:25049357..25049529 (25 bp)
AAACCATATCGCTGACTACTTTGCA
LOC_Os12g40540
Os.53316.1.S1_at--836--7111Chr12:25049256..25049280 (25 bp)
GTCAGTTCCCAGGTTTAGAGAGTCA
LOC_Os12g40540
Os.53316.1.S1_at--28--1431Chr12:25049232..25049256 (25 bp)
AGAAACCGCATGTAGCTGAAGCTCA
LOC_Os12g40540
Os.53316.1.S1_at--1086--2451Chr12:25049204..25049228 (25 bp)
AACACCGAGCACATGATTTTTCTTT
LOC_Os12g40540
Os.53316.1.S1_at--394--6311Chr12:25049141..25049165 (25 bp)
GATGAGCTGATTCTTTTGTTGCACA
LOC_Os12g40540
Target Sequence 
GTAGAGCTTGCTTTAGGGCTATCAAGAGGATCTCTTCAGCAACCATTTTACACGAGAGTACAATTGTGGGGTGCAGCTCT
ACCAATGAACACTCCAGGAGTCCCATGCATATTTGATCCCCAAGGGAGAGCAGGCATCTGTGGTGACTGGCTAACAGGTT
CAAGCATAGAAGCGGCTGTGTTAAGCGGAATGTCTCTTGCAAACCATATCGCTGACTACTTTGCAAGCAGTGGTGAACAA
CCAGAGGAGTTTGCAATTGGTTTGCATGAGAACTTGAGCCAGGTTGAAGGTCATGATATTGGTCAGTTCCCAGGTTTAGA
GAGTCAGAAACCGCATGTAGCTGAAGCTCAGCTAACACCGAGCACATGATTTTTCTTTTGTTAGTTCTGTACTGGTAATT
TCTGTAGCATGTAAATGATGAGCTGATTCTTTTGTTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis