Browse Element(s) Details


Os.19013.1.S1_at

Description gb:AK070648.1
DB_XREF= gi:32980672
TID=Os.19013.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062B16, full insert sequence.
FL= gb:AK070648.1 gb:AK104890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4057011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed
LOC_Os12g40580NANA12+25080253..25080552retrotransposon protein, putative, unclassified
LOC_Os12g40590Os.55414.1.S1_at11/1112+25082483..25086214Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g40600Os.26886.6.S1_s_at10/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40600Os.26886.2.S1_s_at10/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40600OsAffx.16467.1.S1_at5/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19013.1.S1_at--804--4111Chr12:25067975..25067999 (25 bp)
CGCATTTCTGCTATGGTCTCAATGT
LOC_Os12g40570
Os.19013.1.S1_at--406--7811Chr12:25067961..25067985 (25 bp)
GGTCTCAATGTTCTACTGTCCAAAG
LOC_Os12g40570
Os.19013.1.S1_at--572--2191Chr12:25067927..25067951 (25 bp)
ACACAACTTGTTCTCTCTTTTATGA
LOC_Os12g40570
Os.19013.1.S1_at--523--5911Chr12:25067904..25067928 (25 bp)
GAGCTATGGCACTATCAGATTAAGA
LOC_Os12g40570
Os.19013.1.S1_at--528--2551Chr12:25067770..25067794 (25 bp)
AACTGAAACATCGTGTAAGCCTGGA
LOC_Os12g40570
Os.19013.1.S1_at--629--5011Chr12:25067736..25067760 (25 bp)
GCAGGATTTGGCTTTTAGCGTGCAC
LOC_Os12g40570
Os.19013.1.S1_at--1050--671Chr12:25067698..25067722 (25 bp)
ATGACTTGCCTCTGTATGTTGCTTT
LOC_Os12g40570
Os.19013.1.S1_at--58--2511Chr12:25067602..25067626 (25 bp)
AACATACTGACACACTTGGACCATC
LOC_Os12g40570
Os.19013.1.S1_at--137--7691Chr12:25067548..25067572 (25 bp)
GGGTATGATTTCTCAGTCGTACTTC
LOC_Os12g40570
Os.19013.1.S1_at--515--1151Chr12:25067534..25067558 (25 bp)
AGTCGTACTTCTGCTTTTGTGTAAA
LOC_Os12g40570
Os.19013.1.S1_at--494--5671Chr12:25067483..25067507 (25 bp)
GACATCAACTGCTATCCTGAGGTTC
LOC_Os12g40570
Target Sequence 
CGCATTTCTGCTATGGTCTCAATGTTCTACTGTCCAAAGTGGGGACATACACAACTTGTTCTCTCTTTTATGAGCTATGG
CACTATCAGATTAAGAGAGAATGGAGGAAGAACATGTGATTGGATAGTGACCGGCAAGATTTGCTCAAAGAAGGGAGGGA
TTAGGTTTGAAGATTTCAAAGGAAGATTGACAAAAGGAAGTGAACAACTGAAACATCGTGTAAGCCTGGAAAAGGATAAG
CAGGATTTGGCTTTTAGCGTGCACAAGTTTACTTGCAATGACTTGCCTCTGTATGTTGCTTTTGCTTTATTGAAAGATCA
AAATTTTCTTTTGGCAGAAGAATCATTCAGCATTAAAGCTGTTTCTACTTGCTAACATACTGACACACTTGGACCATCAG
GGTTTTTTTTTCCAGGTGTTAGCTGTTGGGTATGATTTCTCAGTCGTACTTCTGCTTTTGTGTAAAGCATTCCATGTTAT
GTTAATGACTTTGACATCAACTGCTATCCTGAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis