Browse Element(s) Details


Os.49666.1.S1_at

Description gb:AK059486.1
DB_XREF= gi:32969504
TID=Os.49666.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G01, full insert sequence.
FL= gb:AK059486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4052010/11MATH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49666.1.S1_at--1108--2111Chr12:25043505..25043529 (25 bp)
ACAGGCATTTGCTCGACAATACTCG
LOC_Os12g40520
Os.49666.1.S1_at--393--3411Chr12:25043544..25043568 (25 bp)
CAGCACACCTGATTATGGCATGTTT
LOC_Os12g40520
Os.49666.1.S1_at--60--8511Chr12:25043559..25043583 (25 bp)
TGGCATGTTTGCTCAATCTGATCCA
LOC_Os12g40520
Os.49666.1.S1_at--720--571Chr12:25043579..25043603 (25 bp)
ATCCATACCTGTTTGATCAACCTGA
LOC_Os12g40520
Os.49666.1.S1_at--883--9731Chr12:25043637..25043661 (25 bp)
TAATTCTTTGAACGGTACTTCTCGG
LOC_Os12g40520
Os.49666.1.S1_at--55--10551Chr12:25043700..25043724 (25 bp)
TTCATACTCCAACGGCCAGTTTGAT
LOC_Os12g40520
Os.49666.1.S1_at--805--711Chr12:25043731..25043755 (25 bp)
ATGATGAACCAGTGGCCATACGGCC
LOC_Os12g40520
Os.49666.1.S1_at--217--2491Chr12:25043757..25043781 (25 bp)
AACAGACCTCTCCTTGCCAAATTTT
LOC_Os12g40520
Os.49666.1.S1_at--207--831Chr12:25043795..25043819 (25 bp)
ATGGTTACCCATATCAGTCAAGTGA
LOC_Os12g40520
Os.49666.1.S1_at--728--6511Chr12:25043818..25043842 (25 bp)
GATTATCCGAATTCCGCAAATGGGT
LOC_Os12g40520
Os.49666.1.S1_at--292--10571NONE
TTCTACATTGTTTTTTATCGCGTGG
NONE
Target Sequence 
ACAGGCATTTGCTCGACAATACTCGATGCCCAATAATTCCAGCACACCTGATTATGGCATGTTTGCTCAATCTGATCCAT
ACCTGTTTGATCAACCTGAGCAATACTATGACGAGGAAATCCCAAGGTTCTATAATTCTTTGAACGGTACTTCTCGGGGG
CTAAGGGAGAGGAGTTATTCGCATTTTNGATCTGCCTTCATACTCCAACGGCCAGTTTGATGATATGATGATGAACCAGT
GGCCATACGGCCAAACAGACCTCTCCTTGCCAAATTTTGGGGCAGATATGAATGGTTACCCATATCAGTCAAGTGATTAT
CCGAATTCCGCAAATGGGTTAAGCAGGTACCCACCCTATCGACCTGCCAATGGGCATTGAGCACCTCTAATGNATTANGT
GATTGCAATTCACAATAATGNGNTTGTAATCTCATGNCTGNTTTCTTCTGAGCTNGAGTGTAATTGNAATCCTTCCCTNA
TAGTTTTATNAAAGAACGGNTCCTCAGTTCCTTATTCAATAGCTATATTTCTTTGCTTTCTACATTGTTTTTTATCGCGT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis