Browse Element(s) Details


Os.8370.1.S1_at

Description gb:AK066451.1
DB_XREF= gi:32976469
TID=Os.8370.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062H18, full insert sequence.
FL= gb:AK066451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4056011/11FLK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed
LOC_Os12g40580NANA12+25080253..25080552retrotransposon protein, putative, unclassified
LOC_Os12g40590Os.55414.1.S1_at11/1112+25082483..25086214Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8370.1.S1_at--882--1191Chr12:25063613..25063637 (25 bp)
AGTATCAGCTACATTCGCAGGCATA
LOC_Os12g40560
Os.8370.1.S1_at--513--951Chr12:25064355..25064379 (25 bp)
AGGAACATCATACGGATCTCCTCCT
LOC_Os12g40560
Os.8370.1.S1_at--1050--4571Chr12:25064384..25064408 (25 bp)
GCGCAGGTCCTCACAACGGTGGAAG
LOC_Os12g40560
Os.8370.1.S1_at--62--6471Chr12:25064447..25064471 (25 bp)
GATACTAGTTGTTTGGAAGCGCCCT
LOC_Os12g40560
Os.8370.1.S1_at--877--431Chr12:25064491..25064515 (25 bp)
ATCTTCTGGTTTTGTTCTGTTCGTC
LOC_Os12g40560
Os.8370.1.S1_at--946--6711Chr12:25064509..25064533 (25 bp)
GTTCGTCTGTCAAGAACTCTCAGAT
LOC_Os12g40560
Os.8370.1.S1_at--194--6791Chr12:25064542..25064566 (25 bp)
GTTAGGACTTCCTGAACGCTTTAGT
LOC_Os12g40560
Os.8370.1.S1_at--74--7431Chr12:25064571..25064595 (25 bp)
GTGTAAACTGCTTTCTGACGGCGGC
LOC_Os12g40560
Os.8370.1.S1_at--318--8951Chr12:25064586..25064610 (25 bp)
TGACGGCGGCAGCAAATGTTCCCTG
LOC_Os12g40560
Os.8370.1.S1_at--674--2291Chr12:25064599..25064623 (25 bp)
AAATGTTCCCTGTTTCCTCATATGC
LOC_Os12g40560
Os.8370.1.S1_at--150--271Chr12:25064618..25064642 (25 bp)
ATATGCTGTCTAGCTTCTCATGTGT
LOC_Os12g40560
Target Sequence 
AGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTNTTCCTGGAGAAATGACTGTGGAGAT
ATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCC
CACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGA
TCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATA
CTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCA
GATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTG
TTTCCTCATATGCTGTCTAGCTTCTCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis