Browse Element(s) Details


Os.26366.1.S1_at

Description gb:AK065760.1
DB_XREF= gi:32975778
TID=Os.26366.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29050 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039D10, full insert sequence.
FL= gb:AK062035.1 gb:AK065760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4049011/11LIM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26366.1.S1_at--1057--3652Chr12:25022542..25022566 (25 bp)
CTTCAACTCCAACCACATCAAAGAA
LOC_Os12g40490
Os.26366.1.S1_at--796--2831Chr12:25022565..25022589 (25 bp)
AAGGGCGCAAAGACCGAATTCGAGA
LOC_Os12g40490
Os.26366.1.S1_at--136--5411Chr12:25022591..25022615 (25 bp)
GAAGCTCGGAGCATTCATCAAACAT
LOC_Os12g40490
Os.26366.1.S1_at--987--2571Chr12:25022624..25022648 (25 bp)
AACGGATTCATCTGAGGCATACGGA
LOC_Os12g40490
Os.26366.1.S1_at--131--6031Chr12:25022647..25022671 (25 bp)
GAGATGGTTTTCGAGCTGCCAATCG
LOC_Os12g40490
Os.26366.1.S1_at--1124--9191Chr12:25022663..25022687 (25 bp)
TGCCAATCGGGCTGTCGAAAGCTAT
LOC_Os12g40490
Os.26366.1.S1_at--299--1551Chr12:25022682..25022706 (25 bp)
AGCTATGGCCTGAGAAGTACCCTTA
LOC_Os12g40490
Os.26366.1.S1_at--724--5511Chr12:25022714..25022738 (25 bp)
GAAAATGACAGGGTCTTTCCCATAT
LOC_Os12g40490
Os.26366.1.S1_at--529--7811Chr12:25022725..25022749 (25 bp)
GGTCTTTCCCATATTGATCATTCCT
LOC_Os12g40490
Os.26366.1.S1_at--64--8051Chr12:25022785..25022809 (25 bp)
GGAGTTACATATACCCTCATCATGG
LOC_Os12g40490
Os.26366.1.S1_at--628--9031Chr12:25022868..25022892 (25 bp)
TGCACCAATGCTTTCTTGTTGTCTT
LOC_Os12g40490
Target Sequence 
CTTCAACTCCAACCACATCAAAGAAGGGCGCAAAGACCGAATTCGAGAAGAAGCTCGGAGCATTCATCAAACATCAGATC
GAAACGGATTCATCTGAGGCATACGGAGATGGTTTTCGAGCTGCCAATCGGGCTGTCGAAAGCTATGGCCTGAGAAGTAC
CCTTAATCATATGAAAATGACAGGGTCTTTCCCATATTGATCATTCCTCAATTGTGAGGATTGATGCATATTTGGAGATT
ATTGGAGTTACATATACCCTCATCATGGTAGCATTAATTTACAGTAAATTGAGAAAAGAAAGAAGAGGATTGAATAGGAC
ATAAATTGCACCAATGCTTTCTTGTTGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis