Browse Element(s) Details


OsAffx.32122.1.S1_at

Description tigr:9640.m03956
TID=OsAffx.32122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL117188 RING-H2 finger protein RHA3b
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4046011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32122.1.S1_at--843--4491Chr12:25002229..25002253 (25 bp)
GCCGTGGCGCTACCGCCTCAACATC
LOC_Os12g40460
OsAffx.32122.1.S1_at--481--4711Chr12:25002167..25002191 (25 bp)
GCGGCCGCAGCAGCTTCTGGAGCAA
LOC_Os12g40460
OsAffx.32122.1.S1_at--653--4911Chr12:25002155..25002179 (25 bp)
GCTTCTGGAGCAAGCGCTGGCCATC
LOC_Os12g40460
OsAffx.32122.1.S1_at--285--8551Chr12:25002150..25002174 (25 bp)
TGGAGCAAGCGCTGGCCATCCCCGT
LOC_Os12g40460
OsAffx.32122.1.S1_at--461--2651Chr12:25002144..25002168 (25 bp)
AAGCGCTGGCCATCCCCGTTCGGCG
LOC_Os12g40460
OsAffx.32122.1.S1_at--1034--4191Chr12:25002004..25002028 (25 bp)
CCCCGGAGGCGGGTTCTTCATGTCG
LOC_Os12g40460
OsAffx.32122.1.S1_at--932--4191Chr12:25002003..25002027 (25 bp)
CCCGGAGGCGGGTTCTTCATGTCGC
LOC_Os12g40460
OsAffx.32122.1.S1_at--10--4271Chr12:25002002..25002026 (25 bp)
CCGGAGGCGGGTTCTTCATGTCGCT
LOC_Os12g40460
OsAffx.32122.1.S1_at--1083--6191Chr12:25001999..25002023 (25 bp)
GAGGCGGGTTCTTCATGTCGCTCGC
LOC_Os12g40460
OsAffx.32122.1.S1_at--931--8351Chr12:25001997..25002021 (25 bp)
GGCGGGTTCTTCATGTCGCTCGCGT
LOC_Os12g40460
OsAffx.32122.1.S1_at--429--4671Chr12:25001996..25002020 (25 bp)
GCGGGTTCTTCATGTCGCTCGCGTC
LOC_Os12g40460
Target Sequence 
GCCGTGGCGCTACCGCCTCAACATCGGCGGCGGCGGCGGCGGCGCGGACGGCCCAAACCGCGGCGGCCGCAGCAGCTTCT
GGAGCAAGCGCTGGCCATCCCCGTTCGGCGGCGGCGCCGCCGCCGCCTCCCGCGTCTTCTCCTTCCGCTCCTACCGCTCC
GCCGCCGCGAAATCCTCCCCGTTCTCCCGCCGCCGCGGCGGCACCGGCCCCGGCGGCGCCACCGCCCCCGGAGGCGGGTT
CTTCATGTCGCTCGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis