Browse Element(s) Details


Os.56033.1.S1_at

Description gb:AK109152.1
DB_XREF= gi:32994361
TID=Os.56033.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F11, full insert sequence.
FL= gb:AK109152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4058011/11MBOAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56033.1.S1_at--603--651Chr04:23879723..23879747 (25 bp)
ATGCACGAGGCGGTGATCTACTACG
LOC_Os04g40580
Os.56033.1.S1_at--996--8931Chr04:23879569..23879593 (25 bp)
TGACGCTGGCGTTCATCCTAGCGAC
LOC_Os04g40580
Os.56033.1.S1_at--67--4511Chr04:23879523..23879547 (25 bp)
GCCGATCACGAGGACCGGGACTGAC
LOC_Os04g40580
Os.56033.1.S1_at--882--4951Chr04:23879432..23879456 (25 bp)
GCATCCGTCCGATCGGCTTTGACCG
LOC_Os04g40580
Os.56033.1.S1_at--379--8451Chr04:23879408..23879432 (25 bp)
GGCCACTCCTAGTTTGATTACGACG
LOC_Os04g40580
Os.56033.1.S1_at--949--6551Chr04:23879393..23879417 (25 bp)
GATTACGACGGGTCACTGGCGCATC
LOC_Os04g40580
Os.56033.1.S1_at--1000--451Chr04:23879371..23879395 (25 bp)
ATCTCTCGTTCAGTTCACGGTACAA
LOC_Os04g40580
Os.56033.1.S1_at--436--6751Chr04:23879364..23879388 (25 bp)
GTTCAGTTCACGGTACAAATTTGTA
LOC_Os04g40580
Os.56033.1.S1_at--720--6531Chr04:23879335..23879359 (25 bp)
GATTTTTCGTTAGATTTGGAGCTAC
LOC_Os04g40580
Os.56033.1.S1_at--28--231Chr04:23879322..23879346 (25 bp)
ATTTGGAGCTACAGATTTTTCATGT
LOC_Os04g40580
Os.56033.1.S1_at--748--2431Chr04:23879268..23879292 (25 bp)
AAAATTATTTGATTAGTGCTGCTAA
LOC_Os04g40580
Target Sequence 
ATGCACGAGGCGGTGATCTACTACGCCACGCTGCGGCCGCCGACGGGGGAGCCGACCGCGTTCTTCGCGCTGCACGGGGC
GTGCGCGGTGGCGGAGGGGTGGTTTGCTGCGCACAAGGGGTGGCCGCGGCCGCCGCGCGCCGTTGCGACCGCCCTGACGC
TGGCGTTCATCCTAGCGACGGGGTTCTGGCTCATCGTCCCGCCGATCACGAGGACCGGGACTGACAGGGTGGTGATCGCG
GAGAGCGAGGCCATGGTCGCGTTCGTTCGGGACGCCGGAAGCTGGGCCGCCGCATCCGTCCGATCGGCTTTGACCGGCCA
CTCCTAGTTTGATTACGACGGGTCACTGGCGCATCTCTCGTTCAGTTCACGGTACAAATTTGTATATTGATTTTTCGTTA
GATTTGGAGCTACAGATTTTTCATGTAGCTTTAGATTTATGTATATAGAAAGAAAAAAATTATTTGATTAGTGCTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis