Browse Element(s) Details


Os.56034.1.S1_at

Description gb:AK109154.1
DB_XREF= gi:32994363
TID=Os.56034.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G01, full insert sequence.
FL= gb:AK109154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5741011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57390OsAffx.3632.1.S1_at11/113+32670353..32670634hypothetical protein
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g57420Os.9341.1.S1_at11/113+32678700..32681277ML domain protein, putative, expressed
LOC_Os03g57430Os.17023.1.S1_a_at11/113+32683646..32689998expressed protein
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56034.1.S1_at--876--2951Chr03:32675854..32675878 (25 bp)
AATGGCGAGGCCGTCATGACACGTG
LOC_Os03g57410
Os.56034.1.S1_at--928--3511Chr03:32675868..32675892 (25 bp)
CATGACACGTGGAGGTTCTTTGCTT
LOC_Os03g57410
Os.56034.1.S1_at--1070--7511Chr03:32675876..32675900 (25 bp)
GTGGAGGTTCTTTGCTTGGTTTTCA
LOC_Os03g57410
Os.56034.1.S1_at--1021--5191Chr03:32675983..32676007 (25 bp)
GAATTCCTCAAGATAGGGACTAGAA
LOC_Os03g57410
Os.56034.1.S1_at--86--8111Chr03:32675999..32676023 (25 bp)
GGACTAGAAATTTCCTCTTGGTAAT
LOC_Os03g57410
Os.56034.1.S1_at--10--10671Chr03:32676010..32676034 (25 bp)
TTCCTCTTGGTAATTGGGTGTAAAT
LOC_Os03g57410
Os.56034.1.S1_at--1108--7671Chr03:32676037..32676061 (25 bp)
GGGTTCAGAGTAGATTTTCTTTTCT
LOC_Os03g57410
Os.56034.1.S1_at--431--6871Chr03:32676074..32676098 (25 bp)
GTTTGGCATAGGATTCTCTTTGGAA
LOC_Os03g57410
Os.56034.1.S1_at--936--8191Chr03:32676095..32676119 (25 bp)
GGAATTAGGATTCACTTTGGATTTT
LOC_Os03g57410
Os.56034.1.S1_at--397--7991Chr03:32676151..32676175 (25 bp)
GGATGAACCTTCTAGAGATCTAATT
LOC_Os03g57410
Os.56034.1.S1_at--1128--10351Chr03:32676175..32676199 (25 bp)
TTTTATATCATCAAGCTTAGTGCAG
LOC_Os03g57410
Target Sequence 
AATGGCGAGGCCGTCATGACACGTGGAGGTTCTTTGCTTGGTTTTCATTTTTTAAAATTTTTTTCTTATTCATATAAAAC
TAAACTTGAGGATGAAATTTGTGTATTCTGCAAAATGGAATGCATAAAAGAATTCCTCAAGATAGGGACTAGAAATTTCC
TCTTGGTAATTGGGTGTAAATTTGGGTTCAGAGTAGATTTTCTTTTCTGATATAAACAAAGTTTGGCATAGGATTCTCTT
TGGAATTAGGATTCACTTTGGATTTTTGGAGGGAGATTATGTATGGATTACAAATTTGGATGAACCTTCTAGAGATCTAA
TTTTTATATCATCAAGCTTAGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis