Browse Element(s) Details


Os.12385.1.S1_at

Description gb:AK061049.1
DB_XREF= gi:32971067
TID=Os.12385.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G01, full insert sequence.
FL= gb:AK104315.1 gb:AK061049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5734011/11DnaJ protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57390OsAffx.3632.1.S1_at11/113+32670353..32670634hypothetical protein
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12385.1.S1_at--1107--10571Chr03:32649532..32649556 (25 bp)
TTCTCACTCACTTGGACAACAGGCA
LOC_Os03g57340
Os.12385.1.S1_at--1147--5611Chr03:32649546..32649570 (25 bp)
GACAACAGGCAGCTGCTTATCAAGT
LOC_Os03g57340
Os.12385.1.S1_at--692--1131Chr03:32649568..32649592 (25 bp)
AGTCCAAGCCCGGTGAAGTTGTCAA
LOC_Os03g57340
Os.12385.1.S1_at--980--4731Chr03:32649738..32649762 (25 bp)
GCTGTCAACGACGAGGGCATGCCGA
LOC_Os03g57340
Os.12385.1.S1_at--405--10251Chr03:32649827..32649851 (25 bp)
TTTGAACCCTGACCAGTGCAAGGCC
LOC_Os03g57340
Os.12385.1.S1_at--1045--5991Chr03:32649918..32649942 (25 bp)
GAGACCATGCCGTACGACGTGAACA
LOC_Os03g57340
Os.12385.1.S1_at--319--5031Chr03:32650034..32650058 (25 bp)
GCAGTGCGCGCAGCAGTAAGCAGCA
LOC_Os03g57340
Os.12385.1.S1_at--300--9791Chr03:32650050..32650074 (25 bp)
TAAGCAGCAAGCAGCGCCGTGCATA
LOC_Os03g57340
Os.12385.1.S1_at--443--331Chr03:32650072..32650096 (25 bp)
ATACATATCTGCACGGCTTTGACGG
LOC_Os03g57340
Os.12385.1.S1_at--806--5611Chr03:32650101..32650125 (25 bp)
GACAAATTGTTTCTTTCCGCTCTAG
LOC_Os03g57340
Os.12385.1.S1_at--710--2951Chr03:32650204..32650228 (25 bp)
AATGACGTACATCAACCGGACCTAC
LOC_Os03g57340
Target Sequence 
TTCTCACTCACTTGGACAACAGGCAGCTGCTTATCAAGTCCAAGCCCGGTGAAGTTGTCAAGCCTGATTCATTCAAGGCT
GTCAACGACGAGGGCATGCCGATGTACCAGCGGCCATTCATGAAGGGGAAGCTCTACATCCACTTCTCCGTGGAATTCCC
CGACTCTTTGAACCCTGACCAGTGCAAGGCCCTGGAGACCGTCCTCCCGCCAAGGCCGGTGTCGCAGTACACCGACATGG
AGCTCGACGAGTGCGAGGAGACCATGCCGTACGACGTGAACATCGAGGAGGAGATGAGGAGGCGGCAGCAACAGCAGCAG
CAGGAGGCATACGACGAGGACGAGGACATGCACGGCGGCGGCGCCCAGCGCGTGCAGTGCGCGCAGCAGTAAGCAGCAAG
CAGCGCCGTGCATACATATCTGCACGGCTTTGACGGCGGCGACAAATTGTTTCTTTCCGCTCTAGGGGCGATAATACTAT
CAAGTTTTCCATGTTAGGCATATGATGATGTGATACTACTTTTGGTCTTTTATACTGCGTATTAATGACGTACATCAACC
GGACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis