Browse Element(s) Details


Os.8102.1.S1_at

Description gb:AK103438.1
DB_XREF= gi:32988647
TID=Os.8102.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129C07, full insert sequence.
FL= gb:AK103438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5733011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8102.1.S1_at--885--8671Chr03:32640301..32640325 (25 bp)
TGTGATGAAATTTCGTCTCGTCCTT
LOC_Os03g57330
Os.8102.1.S1_at--662--1951Chr03:32640235..32640259 (25 bp)
ACTGGGCATTTAGATCCTCAAGGAA
LOC_Os03g57330
Os.8102.1.S1_at--773--351Chr03:32640210..32640234 (25 bp)
ATAAGAGATTCTCCTTACCTGCCAG
LOC_Os03g57330
Os.8102.1.S1_at--1059--10451Chr03:32640047..32640220 (25 bp)
TTACCTGCCAGCTGTGTCGAAGCAG
LOC_Os03g57330
Os.8102.1.S1_at--409--1031Chr03:32639980..32640004 (25 bp)
AGGTCACTAAACATCATCTTGCCAG
LOC_Os03g57330
Os.8102.1.S1_at--166--10691Chr03:32639962..32639986 (25 bp)
TTGCCAGTTCAATTGAGTTGCCTAG
LOC_Os03g57330
Os.8102.1.S1_at--650--8951Chr03:32639918..32639942 (25 bp)
TGACAGCCAATCCAATTATCCAAAG
LOC_Os03g57330
Os.8102.1.S1_at--430--7131Chr03:32639883..32639907 (25 bp)
GTCATTGGCAACATTTTCACCTGAG
LOC_Os03g57330
Os.8102.1.S1_at--484--8251Chr03:32639838..32639862 (25 bp)
GGCAGCCTTGGACTGTGATGATCTA
LOC_Os03g57330
Os.8102.1.S1_at--314--211Chr03:32639797..32639821 (25 bp)
ATTTGCTTTGCATTCATCGCAGCTT
LOC_Os03g57330
Os.8102.1.S1_at--469--6491Chr03:32639758..32639782 (25 bp)
GATATGCAGGCTCAACTGACCATCT
LOC_Os03g57330
Target Sequence 
TGTGATGAAATTTCGTCTCGTCCTTCGGGACTTGGAACTAGGTCGAGTAGTAATCCTAAGGAGAGGACTGGGCATTTAGA
TCCTCAAGGAAATAAGAGATTCTCCTTACCTGCCAGCTGTGTCGAAGCAGGCAAGCGCATGACGAATAAATCTGCGGTTA
ACCGGTCCCTAAAGGTCACTAAACATCATCTTGCCAGTTCAATTGAGTTGCCTAGAAGAGTTGAGCTGCAGACTTGACAG
CCAATCCAATTATCCAAAGAGCATCCATAGTCATTGGCAACATTTTCACCTGAGATATCGTTCATGGATATATTGGCAGC
CTTGGACTGTGATGATCTATCCAATATTTCAAGAAATTTGCTTTGCATTCATCGCAGCTTTTCTTGGCCATATAGATATG
CAGGCTCAACTGACCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis