Browse Element(s) Details


Os.37336.1.S1_at

Description gb:AK059186.1
DB_XREF= gi:32969204
TID=Os.37336.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G09, full insert sequence.
FL= gb:AK059186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5729011/11Cullin-4B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37336.1.S1_at--253--9151Chr03:32616678..32616702 (25 bp)
TGCGAAGAACGCTGCAATCACTTGC
LOC_Os03g57290
Os.37336.1.S1_at--916--4971Chr03:32616701..32616725 (25 bp)
GCATGCGGTAAAGTTCGGGTTCTCC
LOC_Os03g57290
Os.37336.1.S1_at--165--6711Chr03:32616713..32616813 (25 bp)
GTTCGGGTTCTCCAAAAGATGCCAA
LOC_Os03g57290
Os.37336.1.S1_at--777--7731Chr03:32617480..32617504 (25 bp)
GGTGGATGCTGCCATAGTTCGAATA
LOC_Os03g57290
Os.37336.1.S1_at--310--8991Chr03:32617506..32617530 (25 bp)
TGAAGACACGTAAAACCCTCAGCCA
LOC_Os03g57290
Os.37336.1.S1_at--67--3231Chr03:32617650..32617674 (25 bp)
CAAGTTCCCAATCAAGCCATCGGAT
LOC_Os03g57290
Os.37336.1.S1_at--745--2231Chr03:32617745..32617769 (25 bp)
ACAATTACCTGGCTTGACAGCGCTT
LOC_Os03g57290
Os.37336.1.S1_at--53--5651Chr03:32617760..32617784 (25 bp)
GACAGCGCTTGCCATCATAACATGA
LOC_Os03g57290
Os.37336.1.S1_at--744--2351Chr03:32617784..32617808 (25 bp)
AAAGCTCGTCGTCTTCATTTCATTG
LOC_Os03g57290
Os.37336.1.S1_at--1087--231Chr03:32617836..32617860 (25 bp)
ATATGTCTACCTCTTGTTTTTCCGA
LOC_Os03g57290
Os.37336.1.S1_at--277--4311Chr03:32617861..32617885 (25 bp)
CCTTTTTCTCCTTGGAAGCTGTAGC
LOC_Os03g57290
Target Sequence 
TGCGAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGATGCCAAAAGGGCGAGACGTAGAAGAT
AAGGACGAATTTGTATTNAATGAAGAATTTAGNGCCCCTCTCTATCGCATAAAGGTGAATGCTATTCAGATGAAGGAGAC
GGTTGAAGAAAACACAAGCNCAACTGAGAGAGTATTCCAGGACAGACAGTATCAGGTGGATGCTGCCATAGTTCGAATAA
TGAAGACACGTAAAACCCTCAGCCACACGCTTCTAATAACTGAGCTTTTTCAGCAGCTCAAGTTCCCAATCAAGCCATCG
GATATCAAGAAAAGAATAGAGAGCCTAATCGACAGGGAGTACCTGGAGAGAGACAGGAGTAACCCCCAGATCTACAATTA
CCTGGCTTGACAGCGCTTGCCATCATAACATGAAAGCTCGTCGTCTTCATTTCATTGTCAGAGACATTGTAAAGTAGTAA
TTGAATATGTCTACCTCTTGTTTTTCCGACCTTTTTCTCCTTGGAAGCTGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis