Browse Element(s) Details


Os.49626.1.S1_at

Description gb:AK106487.1
DB_XREF= gi:32991696
TID=Os.49626.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H09, full insert sequence.
FL= gb:AK106487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5726011/11GRF zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49626.1.S1_at--358--8811Chr03:32595532..32595556 (25 bp)
TGTTGCTTCAAGTGGCCAAATTCCC
LOC_Os03g57260
Os.49626.1.S1_at--1144--9491Chr03:32595384..32595408 (25 bp)
TCTCCCGATGCGTGTTTCAAGTGTG
LOC_Os03g57260
Os.49626.1.S1_at--724--3171Chr03:32595321..32595345 (25 bp)
AATTGTGGTTCTAGTACCGTCTCCA
LOC_Os03g57260
Os.49626.1.S1_at--961--4291Chr03:32595284..32595308 (25 bp)
CCTCTTCTACTTTGGGCTCATGGAA
LOC_Os03g57260
Os.49626.1.S1_at--853--9891Chr03:32595243..32595267 (25 bp)
TAGCCGGTACCTGTGAACTCAATTG
LOC_Os03g57260
Os.49626.1.S1_at--850--8511Chr03:32595210..32595234 (25 bp)
TGGACATGCTGTACGAAACTTGGAC
LOC_Os03g57260
Os.49626.1.S1_at--702--5631Chr03:32595175..32595199 (25 bp)
GACACGTGTTGCTTAGGTACGCATT
LOC_Os03g57260
Os.49626.1.S1_at--16--6991Chr03:32595159..32595183 (25 bp)
GTACGCATTCTTGCCAAATTCCTTT
LOC_Os03g57260
Os.49626.1.S1_at--994--951Chr03:32595100..32595124 (25 bp)
AGGACATTTCCGTCTTCATGCTGGT
LOC_Os03g57260
Os.49626.1.S1_at--959--6671Chr03:32595077..32595101 (25 bp)
GTTGCTCTGGGAATCTTTTGTCATC
LOC_Os03g57260
Os.49626.1.S1_at--536--471Chr03:32595055..32595079 (25 bp)
ATCTGCTCTAGACATTTCCACTGAT
LOC_Os03g57260
Target Sequence 
TGTTGCTTCAAGTGGCCAAATTCCCAGCAAGAGGAGCTCCTCCGCCTGCTTCAAATGCGGGCAAGAGAACCATTGGGCAA
AGGACTGCCCAAATCAATCTTCAGATCCTTATCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATGCG
TGTTTCAAGTGTGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGTTCTAGTACCGTCTCCAGCCA
TGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCCACAGATACTGATAGCCGGTACCTGTGAACTCAATTGAACTGA
CATGGACATGCTGTACGAAACTTGGACAAATGCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTTTG
CTACTTTTAAGTTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTTGCTCTGGGAATCTTTTGTCATC
TGCTCTAGACATTTCCACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis