Browse Element(s) Details


Os.14753.1.S1_at

Description gb:AK067936.1
DB_XREF= gi:32977954
TID=Os.14753.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128E07, full insert sequence.
FL= gb:AK067936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5728010/11N-dimethylguanosine tRNA methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0003723molecular_functionRNA binding
GO:0004809molecular_functiontRNA (guanine-N2-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14753.1.S1_at--169--5711Chr03:32609432..32609456 (25 bp)
GACTCTGTAGGGACAGCGATCCTTT
LOC_Os03g57280
Os.14753.1.S1_at--1136--6351Chr03:32609449..32609473 (25 bp)
GATCCTTTCAAAATCACCCAAGCTT
LOC_Os03g57280
Os.14753.1.S1_at--595--2251Chr03:32609559..32609583 (25 bp)
AAATTTCTCTAGAGCGGCTGCTGCC
LOC_Os03g57280
Os.14753.1.S1_at--1115--6731Chr03:32609694..32609718 (25 bp)
GTTAGGTCCAGACGTTGTCAACCGT
LOC_Os03g57280
Os.14753.1.S1_at--289--7431Chr03:32609717..32609741 (25 bp)
GTGTTATCAACGGTGCTGCCAGCAC
LOC_Os03g57280
Os.14753.1.S1_at--462--7991Chr03:32609811..32609835 (25 bp)
GGATGAACCTTCAACAAAGCGCCAA
LOC_Os03g57280
Os.14753.1.S1_at--349--8991Chr03:32609879..32609903 (25 bp)
TGAACCTGAGCACGTTTCGCTTTCA
LOC_Os03g57280
Os.14753.1.S1_at--200--7071Chr03:32609925..32609949 (25 bp)
GTAATGCTTCACTTTTCTTGAGGGT
LOC_Os03g57280
Os.14753.1.S1_at--256--7691Chr03:32609959..32609983 (25 bp)
GGGTATATCTATCAGCTGTGTTGCT
LOC_Os03g57280
Os.14753.1.S1_at--1113--8811Chr03:32610022..32610046 (25 bp)
TGTTGTCATATTTTGCGCTTCTGGC
LOC_Os03g57280
Os.14753.1.S1_at--704--4911NONE
GCTTCTGGCCAAGCTTATGCAGTGT
NONE
Target Sequence 
GACTCTGTAGGGACAGCGATCCTTTCAAAATCACCCAAGCTTGAAGCAAATTTCTCTAGAGCGGCTGCTGCCCTCAGCAG
GGCTCAAGCAAAGAAGGTCAAGCGGTTCCTTCCGAACCCAGAACGTCATTGGGGTCCCAAAATCAGAGCTGGTCGGAAGA
TTACAAGTAAACATGCTTCTNTGTTAGGTCCAGACGTTGTCAACCGTGTTATCAACGGTGCTGCCAGCACCGAAGATGAA
AAGGTGGCCGAGCCAAATAATCCAACGACAGAAACCGGAGGAGATGCAACGAATGAAGAGGATGAACCTTCAACAAAGCG
CCAAAAAAACGGCGATGTTGGATTGGCAACCGAACCTTAATTGTCNCTGAACCTGAGCACGTTTCGCTTTCACCACTCAA
TTCTTCCATGTTTGTAATGCTTCACTTTTCTTGAGGGTGTGACTGATGGGTATATCTATCAGCTGTGTTGCTAAACGGTT
TTTAGCAATGAATTTTGATCGCGAAAAATCTGTTGTCATATTTTGCGCTTCTGGCCAAGCTTATGCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis