Browse Element(s) Details


Os.52260.1.S1_at

Description gb:AK065950.1
DB_XREF= gi:32975968
TID=Os.52260.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049M07, full insert sequence.
FL= gb:AK065950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5731011/11Syntaxin 121, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005886cellular_componentplasma membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52260.1.S1_at--1162--5771Chr03:32634542..32634566 (25 bp)
GACGACATCGAGACCCATGTCGGCC
LOC_Os03g57310
Os.52260.1.S1_at--320--8191Chr03:32634615..32634639 (25 bp)
GGAAGCATCAGAAGAGCACCCGCAA
LOC_Os03g57310
Os.52260.1.S1_at--1024--1351Chr03:32634627..32634651 (25 bp)
AGAGCACCCGCAAGTGGACCTGCAT
LOC_Os03g57310
Os.52260.1.S1_at--722--4211Chr03:32634770..32634794 (25 bp)
CCGCCAACGGCATGATGGTCGTATG
LOC_Os03g57310
Os.52260.1.S1_at--208--7811Chr03:32634786..32634810 (25 bp)
GGTCGTATGATAGTCCATGTTGAGT
LOC_Os03g57310
Os.52260.1.S1_at--883--271Chr03:32634795..32634819 (25 bp)
ATAGTCCATGTTGAGTTCATACTTC
LOC_Os03g57310
Os.52260.1.S1_at--508--8671Chr03:32634843..32634867 (25 bp)
TGTCGGGTTTTTTCTTTCGTGATTG
LOC_Os03g57310
Os.52260.1.S1_at--69--3691Chr03:32634856..32634880 (25 bp)
CTTTCGTGATTGTAATTACTTCTGT
LOC_Os03g57310
Os.52260.1.S1_at--1065--2051Chr03:32634873..32634897 (25 bp)
ACTTCTGTATGATTAGTTGATCGTC
LOC_Os03g57310
Os.52260.1.S1_at--659--6651Chr03:32634888..32634912 (25 bp)
GTTGATCGTCTTGATTATTATACAT
LOC_Os03g57310
Os.52260.1.S1_at--608--6571Chr03:32634917..32634941 (25 bp)
GATTCTTCTAAATATCATTGCATTT
LOC_Os03g57310
Target Sequence 
GACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCA
TCAGAAGAGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCG
TGCTCAAGTTCGTCAACAACAACAAGAGCAGCAGCAGCTCGCCGGCGCCGGCGACGCCGTCGCCGCCGCCGCCAACGGCA
TGATGGTCGTATGATAGTCCATGTTGAGTTCATACTTCATAGTGAGAGATTTCTATTTTTTTGTCGGGTTTTTTCTTTCG
TGATTGTAATTACTTCTGTATGATTAGTTGATCGTCTTGATTATTATACATATCTGATTCTTCTAAATATCATTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis