Browse Element(s) Details


Os.22663.1.S1_at

Description gb:AK121531.1
DB_XREF= gi:37991154
TID=Os.22663.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030O16, full insert sequence.
FL= gb:AK121531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5730011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22663.1.S1_at--204--2391Chr03:32629441..32629465 (25 bp)
AAACTCGTTCCTTGGATGCTGGGTA
LOC_Os03g57300
Os.22663.1.S1_at--504--9472Chr03:32629477..32629501 (25 bp)
TCTGACCAACCCAAACCAGTGGAGT
LOC_Os03g57300
Os.22663.1.S1_at--513--6251Chr03:32629515..32629539 (25 bp)
GATGTGTACCTGTAAGTTCACGGTT
LOC_Os03g57300
Os.22663.1.S1_at--914--7911Chr03:32629561..32629585 (25 bp)
GGATTCCAGTTTCAATACTAGCACA
LOC_Os03g57300
Os.22663.1.S1_at--824--3651Chr03:32629598..32629622 (25 bp)
CTTTTCAAGGGTAATTCTGGCGATT
LOC_Os03g57300
Os.22663.1.S1_at--443--10291Chr03:32629686..32629710 (25 bp)
TTTGCCGATTGTTGCTGTAGCCTAT
LOC_Os03g57300
Os.22663.1.S1_at--608--7091Chr03:32629740..32629764 (25 bp)
GTCAACTTTGAGACAACTCGCAGAT
LOC_Os03g57300
Os.22663.1.S1_at--78--651Chr03:32629763..32629787 (25 bp)
ATGCAGTATCTGTCCATAGTTTTCA
LOC_Os03g57300
Os.22663.1.S1_at--818--5591Chr03:32629807..32629831 (25 bp)
GAAATTAGATACTTGAGACGCTCCA
LOC_Os03g57300
Os.22663.1.S1_at--187--291Chr03:32629872..32629896 (25 bp)
ATAGTGTTGCTTTGAATCCCAGATC
LOC_Os03g57300
Os.22663.1.S1_at--513--4891Chr03:32629922..32629946 (25 bp)
GCTTAGTTTGTTTGCCGGATTATCT
LOC_Os03g57300
Target Sequence 
AAACTCGTTCCTTGGATGCTGGGTAAAGATATACAATCTGACCAACCCAAACCAGTGGAGTGGTGACTGGTGAAGATGTG
TACCTGTAAGTTCACGGTTGAGTATAGAATGAATATACATGGATTCCAGTTTCAATACTAGCACAGTTATACNAGTTCTT
TTCAAGGGTAATTCTGGCGATTAGATGTATACCATTGTCGGTGAAATTTTGGTGCTAGGAAGGATGCAGACAACAAAAGC
TTTGNTTTGCCGATTGTTGCTGTAGCCTATAGGTTCTTACATTGTTCTTGTAAATCCTTGTCAACTTTGAGACAACTCGC
AGATGCAGTATCTGTCCATAGTTTTCAGTCATATTGTACTTTTGAGGAAATTAGATACTTGAGACGCTCCANGGGCGGCA
GTTTTGCCTGGCTAATTGTGANTGTTCATCANTATAGTGTTGCTTTGAATCCCAGATCATACGAAGTTATTTTATTTCCA
TTGGCTTAGTTTGTTTGCCGGATTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis