Browse Element(s) Details


Os.56130.1.S1_at

Description gb:AK109309.1
DB_XREF= gi:32994518
TID=Os.56130.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F02, full insert sequence.
FL= gb:AK109309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g245209/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56130.1.S1_at--934--3651NONE
CTTCATCACGCATGCAGCTGGAGAT
NONE
Os.56130.1.S1_at--556--9111Chr03:13954201..13954225 (25 bp)
TGCTGCCCGTTGGTCGGATGGTAAA
LOC_Os03g24520
Os.56130.1.S1_at--450--6251Chr03:13954217..13954241 (25 bp)
GATGGTAAAGACTTTTCTTTCCTCG
LOC_Os03g24520
Os.56130.1.S1_at--874--3931Chr03:13954240..13954264 (25 bp)
CGGCGTGAGGATCATTTCTTCGTAA
LOC_Os03g24520
Os.56130.1.S1_at--405--1771Chr03:13954274..13954298 (25 bp)
ACCTGAGCCTTTTAGCGGTGAGATT
LOC_Os03g24520
Os.56130.1.S1_at--325--7391Chr03:13954291..13954315 (25 bp)
GTGAGATTGCTCATTGCGGCCTATT
LOC_Os03g24520
Os.56130.1.S1_at--1089--3591Chr03:13954302..13954326 (25 bp)
CATTGCGGCCTATTGTTGGCGAGAT
LOC_Os03g24520
Os.56130.1.S1_at--1160--8031Chr03:13954360..13954384 (25 bp)
GGAGATGCAGCGTTATTCATTGTAA
LOC_Os03g24520
Os.56130.1.S1_at--207--10051Chr03:13954421..13954445 (25 bp)
TAGTACGAGTTCCTTTTTTGTGCTT
LOC_Os03g24520
Os.56130.1.S1_at--102--2911Chr03:13954549..13954573 (25 bp)
AAGGTTTGCTGTGCTCAGTCATGTC
LOC_Os03g24520
Os.56130.1.S1_at--764--8791NONE
TGTTCATCATGCTTGTTCACTCTAT
NONE
Target Sequence 
CTTCATCACGCATGCAGCTGGAGATAGATCAAAACCGGCGATCTTGCTGCCCGTTGGTCGGATGGTAAAGACTTTTCTTT
CCTCGGCGTGAGGATCATTTCTTCGTAATTGAGGGGCACCTGAGCCTTTTAGCGGTGAGATTGCTCATTGCGGCCTATTG
TTGGCGAGATTATCTCTGGGCATGTCAGTATATGTTTAAGTGGGGAGATGCAGCGTTATTCATTGTAATTCTCGAACCAA
AGGTTTCAGCAAACCTGGTGATAATAGTACGAGTTCCTTTTTTGTGCTTTTTTTTTAAGTCTTGTGGTTGTGGCAGAATG
TGTAATTGTGTATTATTTCGGTAGATTGTTCAATGGTCCAGAAACCAGTGAATTTTAGATCAGGATGATTGTAAGGTTTG
CTGTGCTCAGTCATGTCATGATATTGTTCATCATGCTTGTTCACTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis