Browse Element(s) Details


Os.56163.1.S1_at

Description gb:AK109511.1
DB_XREF= gi:32994720
TID=Os.56163.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G05, full insert sequence.
FL= gb:AK109511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0400011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03990OsAffx.13652.1.S1_at10/114+1822597..18266633'-5' exonuclease family protein, expressed
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56163.1.S1_at--156--5211Chr04:1833692..1833716 (25 bp)
GAATTGTTACTTTCAGCAGGGACAC
LOC_Os04g04000
Os.56163.1.S1_at--1121--11Chr04:1834041..1834065 (25 bp)
ATTGGCCTACTCCAGGGTCTGAAAA
LOC_Os04g04000
Os.56163.1.S1_at--1158--931Chr04:1834093..1834117 (25 bp)
AGGAAACGTCACTTCTGGACGATTT
LOC_Os04g04000
Os.56163.1.S1_at--16--9051Chr04:1834169..1834193 (25 bp)
TGCAGAGTCGACACATGAAGCTAGA
LOC_Os04g04000
Os.56163.1.S1_at--863--8071Chr04:1834212..1834236 (25 bp)
GGAGCTAGACACTCTGATGACTTCA
LOC_Os04g04000
Os.56163.1.S1_at--37--9771Chr04:1835109..1835133 (25 bp)
TAATCCAGATCGTTATGCCGTGCAA
LOC_Os04g04000
Os.56163.1.S1_at--979--1231Chr04:1835166..1835190 (25 bp)
AGTTGTAGTCTTGGCACTTGCAAAA
LOC_Os04g04000
Os.56163.1.S1_at--619--10071Chr04:1835238..1835262 (25 bp)
TAGTGCATATGTTCCCTAAAGTATT
LOC_Os04g04000
Os.56163.1.S1_at--413--3891Chr04:1835266..1835290 (25 bp)
CTGGTTGCAAACTTACATGGACTAG
LOC_Os04g04000
Os.56163.1.S1_at--1008--1091Chr04:1835331..1835355 (25 bp)
AGTGGTTGATGGTTTCTTCCTTTCT
LOC_Os04g04000
Os.56163.1.S1_at--998--10551Chr04:1835344..1835368 (25 bp)
TTCTTCCTTTCTTTTGTTGCCAATA
LOC_Os04g04000
Target Sequence 
GAATTGTTACTTTCAGCAGGGACACTCAGGAGATTGGCCTACTCCAGGGTCTGAAAATGTTGAAAATTTTCAAGGATTAT
GACCAGGAAACGTCACTTCTGGACGATTTTAATTTTTATGAAGAAAAGGAAAGTGCACGATGTGCCAAAAAGGGAATAAA
TGCAGAGTCGACACATGAAGCTAGACTATTGTTTTTTGGAACAGGAGCTAGACACTCTGATGACTTCAAATCAATGGAAA
ATTTAGAGGCAAGCATGGAGAATACAATTTTATATTAATCCAGATCGTTATGCCGTGCAATTGAAATAAGAAGCTTGATT
GGTCAGTGAAGAAGTTGTAGTCTTGGCACTTGCAAAACCATTTTTGGTCCAGCAAGGAAAGGCAAGATTAATTGGGTGTT
TGTATAGTGCATATGTTCCCTAAAGTATTTAACTGGTTGCAAACTTACATGGACTAGTTTATCTGTATTATTAAGTTGTA
CTACTTGATTACTTGTAAGTGGTTGATGGTTTCTTCCTTTCTTTTGTTGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis