Browse Element(s) Details


Os.56206.1.S1_at

Description gb:AK109613.1
DB_XREF= gi:32994822
TID=Os.56206.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G09, full insert sequence.
FL= gb:AK109613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4325011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43170Os.53236.1.S1_at11/112+26021916..26023607B-box zinc finger family protein, expressed
LOC_Os02g43180Os.7703.1.S1_at11/112+26025639..26028031Glutaredoxin family protein, expressed
LOC_Os02g43194Os.2325.1.S1_at11/112+26028467..26035553aldehyde dehydrogenase family protein, expressed
LOC_Os02g43210OsAffx.12471.1.S1_at11/112+26036491..26037270hypothetical protein
LOC_Os02g43220NANA2+26040156..26040812polyamine oxidase, putative
LOC_Os02g43230OsAffx.12472.1.S1_at11/112+26041700..26042164hypothetical protein
LOC_Os02g43240NANA2+26043475..26044888hypothetical protein
LOC_Os02g43250Os.56206.1.S1_at11/112+26046964..26048295Leucine Rich Repeat family protein, expressed
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56206.1.S1_at--930--7311Chr02:26047452..26047476 (25 bp)
GTGCTCGACCTCACGGGCAATGCGG
LOC_Os02g43250
Os.56206.1.S1_at--474--7571Chr02:26047227..26047251 (25 bp)
GGGCTTGACCGGAACATGTTCGCCG
LOC_Os02g43250
Os.56206.1.S1_at--419--311Chr02:26047197..26047221 (25 bp)
ATACCGGATCAGTACGCGGCTCGGG
LOC_Os02g43250
Os.56206.1.S1_at--402--4351Chr02:26047157..26047181 (25 bp)
CCACGGACAAGTGGGTCCCATTTGT
LOC_Os02g43250
Os.56206.1.S1_at--142--7711Chr02:26047145..26047169 (25 bp)
GGGTCCCATTTGTCAGGCTCATGCT
LOC_Os02g43250
Os.56206.1.S1_at--62--3592Chr03:27186181..27186535 (25 bp)
CATTTGTCAGGCTCATGCTGCAGGG
NONE
Os.56206.1.S1_at--439--7391Chr02:26047053..26047077 (25 bp)
GTGAGTTTGGCGGACAATTGCTTGC
LOC_Os02g43250
Os.56206.1.S1_at--469--71Chr02:26047037..26047061 (25 bp)
ATTGCTTGCCAAAGTGTCCACACCA
LOC_Os02g43250
Os.56206.1.S1_at--136--2331Chr02:26047027..26047051 (25 bp)
AAAGTGTCCACACCAGTTCTCCTTC
LOC_Os02g43250
Os.56206.1.S1_at--421--2431Chr02:26046984..26047008 (25 bp)
AAAAGCAACGCCACGTGTCCCAAGT
LOC_Os02g43250
Os.56206.1.S1_at--759--8711Chr02:26046969..26046993 (25 bp)
TGTCCCAAGTGCTTTCCGTGAAATA
LOC_Os02g43250
Target Sequence 
GTGCTCGACCTCACGGGCAATGCGGTGTCCGGCGCGGTCCCAGGCGCCGCGTTCGCGCACCCGTCGCTGCAGCAACTGCG
GCTGGGGTCCAACAAGCTCGGCGCCGTCGAGGAGGCGCCCGACGGCGGCGCGTCGAGCCAGCTCGTCGAGCTGGACCTCG
GCGGGAACAGGCTGACCGGGCGGCTGCCTGGATGCGTCGCGGCGATGCCGCGGCTCGCGGTGGTCGGGCTTGACCGGAAC
ATGTTCGCCGGCGGCATACCGGATCAGTACGCGGCTCGGGCCGCGGCGGACGGGCCCACGGACAAGTGGGTCCCATTTGT
CAGGCTCATGCTGCAGGGGAACTTTCTCTGTGGGGCCCTGCCGAGCCAGCTGAGGCAGCTGAAGGAGGACGGCGCGGTGG
TGAGTTTGGCGGACAATTGCTTGCCAAAGTGTCCACACCAGTTCTCCTTCTGCCGTGGGGCCCCGCAGAAAAGCAACGCC
ACGTGTCCCAAGTGCTTTCCGTGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis