Browse Element(s) Details


Os.56239.1.S1_at

Description gb:AK109674.1
DB_XREF= gi:32994883
TID=Os.56239.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B06, full insert sequence.
FL= gb:AK109674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28680Os.8260.1.S1_at11/1110+14631191..14633483expressed protein
LOC_Os10g28690Os.56239.1.S1_at11/1110+14645242..14646975expressed protein
LOC_Os10g28700Os.53394.1.S1_at11/1110+14650476..14651268expressed protein
LOC_Os10g28710Os.22987.1.S1_at11/1110+14654071..14656835expressed protein
LOC_Os10g28724OsAffx.22848.4.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28724OsAffx.22848.3.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28740NANA10+14667436..14669515retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56239.1.S1_at--999--5411Chr10:14645813..14645837 (25 bp)
GAAGCCTTCATTGGTGGAGTCCCGC
LOC_Os10g28690
Os.56239.1.S1_at--762--10671Chr10:14645770..14645794 (25 bp)
TTCCAGGGCCTTGGTGTCGGCGCAC
LOC_Os10g28690
Os.56239.1.S1_at--825--3631Chr10:14645581..14645605 (25 bp)
CTTCCTTGCTCATGGTGGCGTGGTG
LOC_Os10g28690
Os.56239.1.S1_at--109--8471Chr10:14645558..14645582 (25 bp)
TGGCCGTCCGAGTCGGCATGTGAAC
LOC_Os10g28690
Os.56239.1.S1_at--84--791Chr10:14645541..14645565 (25 bp)
ATGTGAACCGAGTCAACGCTCCACG
LOC_Os10g28690
Os.56239.1.S1_at--682--3091Chr10:14645499..14645523 (25 bp)
AATACTGCTCACAATACTGCCTTAG
LOC_Os10g28690
Os.56239.1.S1_at--149--331Chr10:14645486..14645510 (25 bp)
ATACTGCCTTAGGACCTACTTTGAA
LOC_Os10g28690
Os.56239.1.S1_at--473--1391Chr10:14645473..14645497 (25 bp)
ACCTACTTTGAACTGGGTCTGTAAG
LOC_Os10g28690
Os.56239.1.S1_at--854--7635Chr09:7843288..7843457 (25 bp)
GGGACCCAGAGTGAACTTATCCGAA
NONE
Os.56239.1.S1_at--134--1532Chr02:18941755..18941782 (23 bp)
AGCATACAATTGTACTCCCTTCGTC
NONE
Os.56239.1.S1_at--276--3794Chr04:28247512..28247532 (21 bp)
CTCCCTTCGTCCCATAATAGATGAC
NONE
Target Sequence 
GAAGCCTTCATTGGTGGAGTCCCGCGATTGGACGCAGCGCTTCTTCCAGGGCCTTGGTGTCGGCGCACCCCTCCCGGCTC
CCGTGGAGCTCCATGGCACCTACTCTGCCCTCGTCCGCGGCGTCCTCTCCTCCTCCACCGTCTCCGCCTCTGCCTCCCCG
TGCATCTCCTGCACGCTCAGACGCTCTCCATCTCCCTCGCCGCCGTCGTGAGTCCCATCTCCTCTTGCTCCTCTTCCTTG
CTCATGGTGGCGTGGTGGCCGTCCGAGTCGGCATGTGAACCGAGTCAACGCTCCACGTCGGACGCCACGTCAGCAATACT
GCTCACAATACTGCCTTAGGACCTACTTTGAACTGGGTCTGTAAGTTCGGGGACCCGTCGTACCCGGTTTTGTGTCGGAG
GGATGAAAATCAGACAGCGTGACAAATAGAGGGACCCAGAGTGAACTTATCCGAAGAAAAAAGACCAATCTTAAGCATAC
AATTGTACTCCCTTCGTCCCATAATAGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis