Browse Element(s) Details


Os.56292.1.S1_at

Description gb:AK109781.1
DB_XREF= gi:32994990
TID=Os.56292.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C01, full insert sequence.
FL= gb:AK109781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g081803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g075903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g066501/11Transposable element protein, putative, Retrotrans_gag
LOC_Os04g259401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g400501/11retrotransposon protein, putative, unclassified
LOC_Os12g202201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g111601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g301791/11Cytochrome P450 family protein, expressed
LOC_Os06g250801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g379801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g415601/11transposon protein, putative, Mutator sub-class
LOC_Os12g215701/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g332501/11retrotransposon protein, putative, unclassified
LOC_Os06g470901/11hypothetical protein
LOC_Os08g115401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g010301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g302601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g189501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g164801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g204601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g262401/11retrotransposon protein, putative, unclassified
LOC_Os03g307101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g280401/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein
LOC_Os09g08210OsAffx.17603.1.S1_at11/119+4256077..4257021hypothetical protein
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56292.1.S1_at--1030--4271Chr02:16504871..16505049 (25 bp)
CCTCCAGCTGCAGAGCAAGAATATG
NONE
Os.56292.1.S1_at--1025--3811Chr02:16504872..16505050 (25 bp)
CTCCAGCTGCAGAGCAAGAATATGA
NONE
Os.56292.1.S1_at--232--1611NONE
AGCTGCAGAGCAAGAATATGAGTGT
NONE
Os.56292.1.S1_at--509--5171Chr04:23538968..23538989 (22 bp)
GCAAGAATATGAGTGTGTGTCCGAT
NONE
Os.56292.1.S1_at--1115--1451Chr04:23538968..23538992 (25 bp)
AGAATATGAGTGTGTGTCCGATGGT
NONE
Os.56292.1.S1_at--1122--1092Chr11:12695725..12695796 (25 bp)
AGTGTGTGTCCGATGGTGGTTTCTC
NONE
Os.56292.1.S1_at--875--7473Chr11:12695726..12695797 (25 bp)
GTGTGTGTCCGATGGTGGTTTCTCC
NONE
Os.56292.1.S1_at--765--74717Chr11:12201013..12201033 (21 bp)
GTGTGTCCGATGGTGGTTTCTCCGA
NONE
Os.56292.1.S1_at--645--86512Chr11:12231972..12231992 (21 bp)
TGTGTCCGATGGTGGTTTCTCCGAG
NONE
Os.56292.1.S1_at--444--87143Chr12:11813482..11813501 (20 bp)
TGTCCGATGGTGGTTTCTCCGAGGA
NONE
Os.56292.1.S1_at--746--1043179Chr12:2058982..2059006 (25 bp)
TTATGTAAGACTTTTATGATGTTTG
NONE
Target Sequence 
CCTCCAGCTGCAGAGCAAGAATATGAGTGTGTGTCCGATGGTGGTTTCTCCGAGGAGTAGGCTTCGTCCGTGCCATCGAG
GATGCCTGTGGAGTGGTGTTCCCGCTGCAGTTCAAGTCAAGGCTTAGCTCCTGTTATCTTTCGTTTTTCCGCTGCATTTA
TGTAAGACTTTTATGATGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis