Browse Element(s) Details


Os.15391.1.S1_at

Description gb:AK101561.1
DB_XREF= gi:32986770
TID=Os.15391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050D17, full insert sequence.
FL= gb:AK101561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0816011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15391.1.S1_at--328--9371Chr09:4228163..4228187 (25 bp)
TCGACGTGCACGAGTACAGCGCCAC
LOC_Os09g08160
Os.15391.1.S1_at--612--3851Chr09:4228192..4228216 (25 bp)
CTGCACAACATGATCGCCTTCGAGA
LOC_Os09g08160
Os.15391.1.S1_at--679--1451Chr09:4228214..4228238 (25 bp)
AGAAGCACTTCCACTGGGCGCACGG
LOC_Os09g08160
Os.15391.1.S1_at--707--4651Chr09:4228319..4228343 (25 bp)
GCGTGCTGTCGAGCATGCGCAAGAC
LOC_Os09g08160
Os.15391.1.S1_at--469--9311Chr09:4228403..4228427 (25 bp)
TCCCCGACGAGTACGCGGAGATGGT
LOC_Os09g08160
Os.15391.1.S1_at--249--8291Chr09:4228477..4228501 (25 bp)
GGCTTTGTGCTTCACTTTTTCCCGT
LOC_Os09g08160
Os.15391.1.S1_at--294--531Chr09:4228554..4228578 (25 bp)
ATCGCTGCTGCAGACAGTCTATACT
LOC_Os09g08160
Os.15391.1.S1_at--279--1411Chr09:4228565..4228589 (25 bp)
AGACAGTCTATACTATTCTTAGCTA
LOC_Os09g08160
Os.15391.1.S1_at--208--7371Chr09:4228591..4228615 (25 bp)
GTGAAAACTACCTAGGTTATGCCGA
LOC_Os09g08160
Os.15391.1.S1_at--951--2231Chr09:4228648..4228672 (25 bp)
AAATTATACGGGATTTTGCCCATGT
LOC_Os09g08160
Os.15391.1.S1_at--442--10272Chr09:4228662..4228686 (25 bp)
TTTGCCCATGTAAGGGCACCCGCAA
LOC_Os09g08160
Target Sequence 
TCGACGTGCACGAGTACAGCGCCACCGTGCTGCACAACATGATCGCCTTCGAGAAGCACTTCCACTGGGCGCACGGCGCG
TGCGTGACGGCNCACGTGGCGAGGATGGAGGGNCTCGTCCGGTGCCCGCAGGACGCGGCGTTCCTCCGGCGGCGAGGCGT
GCTGTCGAGCATGCGCAAGACGGACGCGGAGCTGGTGGCCTTCTTCCGCGAGCTCGGGGAGGAGACCGTCGGCGCGCGCC
TCCCCGACGAGTACGCGGAGATGGTGGANGCCGTGGCGTGCCACCGGAGCAGGAAGGTGAGCTGGTGGTGNGGCGGCTTT
GTGCTTCACTTTTTCCCGTCGCCATGGGTGGTCGTGTCGCTCGTGGCGGCTGCGGCGGTCATCGTTGTNCCATCGCTGCT
GCAGACAGTCTATACTATTCTTAGCTANGTGAAAACTACCTAGGTTATGCCGAAANAAGTNTACAATTTCCAACCTCTAT
CCCNAAAATTATACGGGATTTTGCCCATGTAAGGGCACCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis