Browse Element(s) Details


Os.50903.2.S1_at

Description gb:AK059358.1
DB_XREF= gi:32969376
TID=Os.50903.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D08, full insert sequence.
FL= gb:AK059358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0813011/11Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004425molecular_functionindole-3-glycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50903.2.S1_at--1067--4991Chr09:4200795..4200819 (25 bp)
GCAGTAAGTTTACTGATTACCCGTT
LOC_Os09g08130
Os.50903.2.S1_at--369--6831Chr09:4200788..4200812 (25 bp)
GTTTACTGATTACCCGTTTTCAGCT
LOC_Os09g08130
Os.50903.2.S1_at--984--6531Chr09:4200781..4200805 (25 bp)
GATTACCCGTTTTCAGCTAAGTTGG
LOC_Os09g08130
Os.50903.2.S1_at--1076--4191Chr09:4200776..4200800 (25 bp)
CCCGTTTTCAGCTAAGTTGGTCATA
LOC_Os09g08130
Os.50903.2.S1_at--247--9791Chr09:4200764..4200788 (25 bp)
TAAGTTGGTCATACATGTGCTTCAA
LOC_Os09g08130
Os.50903.2.S1_at--435--7811Chr09:4200758..4200782 (25 bp)
GGTCATACATGTGCTTCAAATTTCC
LOC_Os09g08130
Os.50903.2.S1_at--230--4271Chr09:4200735..4200759 (25 bp)
CCAGCTGAAATATTGTACGGAACGT
LOC_Os09g08130
Os.50903.2.S1_at--549--6991Chr09:4200721..4200745 (25 bp)
GTACGGAACGTCTGAAATGGATTAA
LOC_Os09g08130
Os.50903.2.S1_at--617--1451Chr09:4200697..4200721 (25 bp)
AGAATATCTGTAATTGGACTTAATA
LOC_Os09g08130
Os.50903.2.S1_at--844--11Chr09:4200685..4200709 (25 bp)
ATTGGACTTAATATTTATCCACGAT
LOC_Os09g08130
Os.50903.2.S1_at--584--10091Chr09:4200661..4200685 (25 bp)
TATAACAAATAACACTAATTCTGGG
LOC_Os09g08130
Target Sequence 
GCAGTAAGTTTACTGATTACCCGTTTTCAGCTAAGTTGGTCATACATGTGCTTCAAATTTCCAGCTGAAATATTGTACGG
AACGTCTGAAATGGATTAAGAATATCTGTAATTGGACTTAATATTTATCCACGATATAACAAATAACACTAATTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50903.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis