Browse Element(s) Details


OsAffx.29757.2.S1_at

Description tigr:9637.m00580
TID=OsAffx.29757.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 32, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0812010/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g080724/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08072OsAffx.6200.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072Os.2296.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_x_at7/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_at4/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08084NANA9+4171824..4172263NA
LOC_Os09g08100OsAffx.6201.1.S1_at11/119+4174711..4175073hypothetical protein
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29757.2.S1_at--67--4691Chr09:4196994..4197060 (25 bp)
GCGGCTGGACTACGGCCACACGTTC
LOC_Os09g08120
OsAffx.29757.2.S1_at--750--8131Chr09:4196999..4197139 (25 bp)
TGGACTACGGCCACACGTTCCCGAG
LOC_Os09g08120
OsAffx.29757.2.S1_at--558--9931Chr09:4197004..4197144 (25 bp)
TACGGCCACACGTTCCCGAGGAAGA
LOC_Os09g08120
OsAffx.29757.2.S1_at--258--3911Chr09:4197006..4197146 (25 bp)
CGGCCACACGTTCCCGAGGAAGATG
LOC_Os09g08120
OsAffx.29757.2.S1_at--548--9311Chr09:4197133..4197157 (25 bp)
TCCCGAGGAAGATGTGGATCGCCAA
LOC_Os09g08120
OsAffx.29757.2.S1_at--363--4191Chr09:4197134..4197158 (25 bp)
CCCGAGGAAGATGTGGATCGCCAAG
LOC_Os09g08120
OsAffx.29757.2.S1_at--759--6191Chr09:4197137..4197161 (25 bp)
GAGGAAGATGTGGATCGCCAAGGAC
LOC_Os09g08120
OsAffx.29757.2.S1_at--1105--6192Chr09:4197235..4197259 (25 bp)
GAGGCACCAGGCTAGGCGCCGGCGC
LOC_Os09g08120
OsAffx.29757.2.S1_at--55--3472Chr09:4197291..4197388 (25 bp)
CAGGCGGACGTGGAGATTGACCATT
LOC_Os09g08120
OsAffx.29757.2.S1_at--217--911Chr09:4168986..4169495 (25 bp)
AGGCGGACGTGGAGATTGACCATTC
LOC_Os09g08072
OsAffx.29757.2.S1_at--735--3952Chr09:4197295..4197392 (25 bp)
CGGACGTGGAGATTGACCATTCGGT
LOC_Os09g08120
Target Sequence 
GCGGCTGGACTACGGCCACACGTTCCCGAGGAAGATGTGGATCGCCAAGGACGGCAAGCAGCTGCTGCAGTGGCCAATCG
AGGAGATCGAGACGCTGAGGAGGAAGCGCGCCGCCGGTCTCCGGCGAGGCACCAGGCTAGGCGCCGGCGCGGTGCAGGAG
ATCGTCGGCGTGGCGAGCTCGCAGGCGGACGTGGAGATTGACCATTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29757.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis