Browse Element(s) Details


OsAffx.6201.1.S1_at

Description tigr:9637.m00578
TID=OsAffx.6201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08040OsAffx.22848.3.S1_x_at3/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08040OsAffx.22848.4.S1_x_at2/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08040OsAffx.22848.4.S1_at2/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08050NANA9+4152332..4153255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08060NANA9+4160660..4161648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08072OsAffx.6200.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072Os.2296.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_x_at7/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_at4/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08084NANA9+4171824..4172263NA
LOC_Os09g08100OsAffx.6201.1.S1_at11/119+4174711..4175073hypothetical protein
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6201.1.S1_at--748--6131Chr09:4174975..4174999 (25 bp)
GTGGGTCGGCGGGTGGAACGTGATC
LOC_Os09g08100
OsAffx.6201.1.S1_at--268--8111Chr09:4174948..4174972 (25 bp)
GGACGTTGCCGGCAACAATCAGATT
LOC_Os09g08100
OsAffx.6201.1.S1_at--886--2451Chr09:4174935..4174959 (25 bp)
AACAATCAGATTCAGCGGGTCGGCG
LOC_Os09g08100
OsAffx.6201.1.S1_at--791--7611Chr09:4174881..4174905 (25 bp)
GGGACCAATGACAGGCTGCAGTTCG
LOC_Os09g08100
OsAffx.6201.1.S1_at--694--2991Chr09:4174875..4174899 (25 bp)
AATGACAGGCTGCAGTTCGTCCGCG
LOC_Os09g08100
OsAffx.6201.1.S1_at--634--1231Chr09:4174862..4174886 (25 bp)
AGTTCGTCCGCGTGGTCGCAGCCGA
LOC_Os09g08100
OsAffx.6201.1.S1_at--13--7691Chr09:4174821..4174845 (25 bp)
GGGTCCAACTATCTGGTTGTCATCG
LOC_Os09g08100
OsAffx.6201.1.S1_at--799--10151Chr09:4174812..4174836 (25 bp)
TATCTGGTTGTCATCGATGCTGCTA
LOC_Os09g08100
OsAffx.6201.1.S1_at--500--10811Chr09:4174805..4174829 (25 bp)
TTGTCATCGATGCTGCTAGCTCTCG
LOC_Os09g08100
OsAffx.6201.1.S1_at--252--9071Chr09:4174792..4174816 (25 bp)
TGCTAGCTCTCGCAAAAAGACGAGG
LOC_Os09g08100
OsAffx.6201.1.S1_at--858--8751Chr09:4174763..4174787 (25 bp)
TGTACGTGGCCGTTGTGGCTGACTT
LOC_Os09g08100
Target Sequence 
GTGGGTCGGCGGGTGGAACGTGATCGAGGACGTTGCCGGCAACAATCAGATTCAGCGGGTCGGCGCGTGGGCGGTGGGGA
AGCACAACCAGCTGGGGACCAATGACAGGCTGCAGTTCGTCCGCGTGGTCGCAGCCGAGGAGCAGGTGGTGCAGGGGTCC
AACTATCTGGTTGTCATCGATGCTGCTAGCTCTCGCAAAAAGACGAGGGAGTTGTACGTGGCCGTTGTGGCTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis