Browse Element(s) Details


OsAffx.17599.1.S1_at

Description tigr:9637.m00579
TID=OsAffx.17599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0811011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08060NANA9+4160660..4161648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08072OsAffx.6200.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072Os.2296.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_x_at7/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_at4/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08084NANA9+4171824..4172263NA
LOC_Os09g08100OsAffx.6201.1.S1_at11/119+4174711..4175073hypothetical protein
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17599.1.S1_at--271--5811Chr09:4185402..4185426 (25 bp)
GACCGAATTGCATTTCCTGCTCAAG
LOC_Os09g08110
OsAffx.17599.1.S1_at--777--9711Chr09:4185422..4185446 (25 bp)
TCAAGCTGTTGTTGCAGTTCCGCAT
LOC_Os09g08110
OsAffx.17599.1.S1_at--953--10691Chr09:4185433..4185457 (25 bp)
TTGCAGTTCCGCATATGGCGTTGTT
LOC_Os09g08110
OsAffx.17599.1.S1_at--186--10111Chr09:4185446..4185470 (25 bp)
TATGGCGTTGTTGCAGTACTCCGAC
LOC_Os09g08110
OsAffx.17599.1.S1_at--1133--1491Chr09:4185472..4185496 (25 bp)
AGCACTTCTGCTACCACCAGTGGTG
LOC_Os09g08110
OsAffx.17599.1.S1_at--1135--1091Chr09:4185490..4185514 (25 bp)
AGTGGTGCCCAACCACCATTGCGGA
LOC_Os09g08110
OsAffx.17599.1.S1_at--835--1871Chr09:4185546..4185570 (25 bp)
ACGATGTTGGTAAAGGCCGCCGCTT
LOC_Os09g08110
OsAffx.17599.1.S1_at--195--10711Chr09:4185613..4185637 (25 bp)
TTGCGCTGCCGCTTGATGTGAAAGG
LOC_Os09g08110
OsAffx.17599.1.S1_at--995--5571Chr09:4185632..4185656 (25 bp)
GAAAGGCTTGCAGCCACATCAGGTT
LOC_Os09g08110
OsAffx.17599.1.S1_at--629--2091Chr09:4185647..4185671 (25 bp)
ACATCAGGTTGCTATCGCTACCCAG
LOC_Os09g08110
OsAffx.17599.1.S1_at--486--4531Chr09:4185748..4185772 (25 bp)
GCCCTACAACCACCGAGAAAACATG
LOC_Os09g08110
Target Sequence 
GACCGAATTGCATTTCCTGCTCAAGCTGTTGTTGCAGTTCCGCATATGGCGTTGTTGCAGTACTCCGACCAGCACTTCTG
CTACCACCAGTGGTGCCCAACCACCATTGCGGAGGGCGGCAAACTGATGAGGGCCAACGGGAAGACGATGTTGGTAAAGG
CCGCCGCTTTCCACACCTTGCCATTGCTCTGTGCCACCACTCGTCGTCGCGTTGCGCTGCCGCTTGATGTGAAAGGCTTG
CAGCCACATCAGGTTGCTATCGCTACCCAGCTCCCTCGAGCTCTTCCGACACGTCACCCCACTATCACCTATCACCACCC
TATCCTGATATCCTCAACCTCCCGACGCCCTACAACCACCGAGAAAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis